Gorka, In short, it does not work using Axis2 or any other known Java soap client writing libs. For longer version of the story, see this:
http://www.biostars.org/post/show/362/anyone-using-biomart-java-web-services/ Best, Syed On 22 October 2012 15:55, Gorka Prieto <[email protected]> wrote: > Dear all, > > I am trying to access Biomart from a java program using the WSDL at > http://www.biomart.org/biomart/martwsdl. I think the query and returned > results are OK since using Wireshark I can see both of them with the > expected data, however I get an empty List<ResultsRow> in the code as result > of the query. > > I attach part of the code. Am I missing something?? > > Thanks in advance, > Gorka > > public class Ensembl { > public Ensembl() throws MalformedURLException { > //BioMartSoapService service = new BioMartSoapService(); > BioMartSoapService service = new BioMartSoapService(new > URL("http://www.biomart.org/biomart/martwsdl";), new > QName("http://www.biomart.org:80/MartServiceSoap","BioMartSoapService";)); > //mPort = service.getBioMartSoapPort(); > mPort = service.getPort(new > QName("http://www.biomart.org:80/MartServiceSoap";, "BioMartSoapPort"), > MartServiceSoap.class); > } > > List<ResultsRow> query( String dataset, List<Filter> filters, > List<Attribute> attrs ) throws BioMartException_Exception { > Dataset ds = new Dataset(); > ds.setName(dataset); > if( filters != null ) > ds.getFilter().addAll(filters); > if( attrs != null ) > ds.getAttribute().addAll(attrs); > ArrayList<Dataset> list = new ArrayList<Dataset>(); > list.add(ds); > //return mPort.query("default", 0, -1, 1, list); > return mPort.query("default", 0, 10, 1, list); > } > > ... > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
