Hi Sebastien,

I got the following response for your frist query:

Query ERROR: caught BioMart::Exception::Usage: Attribute
ensembl_transcript_idid NOT FOUND

It appears that the attribute "ensembl_transcript_idid" maybe mistyped



a









On Tue, Nov 13, 2012 at 12:43 PM, Moretti Sébastien <
[email protected]> wrote:

> Hi
>
> I wonder why such queries return a 200 HTTP code:
> http://www.biomart.org/**biomart/martservice?query=%3C?**
> xml%20version=%221.0%22%**20encoding=%22UTF-8%22?%3E%3C!**
> DOCTYPE%20Query%3E%3CQuery%20%**20virtualSchemaName%20=%20%**
> 22default%22%20formatter%20=%**20%22TSV%22%20header%20=%20%**
> 220%22%20uniqueRows%20=%20%**220%22%20count%20=%20%22%22%**
> 20datasetConfigVersion%20=%20%**220.6%22%20%3E%3CDataset%**
> 20name%20=%20%22hsapiens_gene_**ensembl%22%20interface%20=%20%**
> 22default%22%20%3E%3CFilter%**20name%20=%20%22end%22%**
> 20value%20=%20%2210000%22/%3E%**3CFilter%20name%20=%20%**
> 22start%22%20value%20=%20%221%**22/%3E%3CAttribute%20name%20=%**
> 20%22ensembl_gene_id%22%20/%**3E%3CAttribute%20name%20=%20%**
> 22ensembl_transcript_idid%22%**20/%3E%3C/Dataset%3E%3C/Query%**3E<http://www.biomart.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%3C!DOCTYPE%20Query%3E%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22%20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20%22end%22%20value%20=%20%2210000%22/%3E%3CFilter%20name%20=%20%22start%22%20value%20=%20%221%22/%3E%3CAttribute%20name%20=%20%22ensembl_gene_id%22%20/%3E%3CAttribute%20name%20=%20%22ensembl_transcript_idid%22%20/%3E%3C/Dataset%3E%3C/Query%3E>
> or
> http://www.biomart.org/**biomart/martservice?queryno=%**
> 3C?xml%20version=%221.0%22%**20encoding=%22UTF-8%22?%3E%3C!**
> DOCTYPE%20Query%3E%3CQuery%20%**20virtualSchemaName%20=%20%**
> 22default%22%20formatter%20=%**20%22TSV%22%20header%20=%20%**
> 220%22%20uniqueRows%20=%20%**220%22%20count%20=%20%22%22%**
> 20datasetConfigVersion%20=%20%**220.6%22%20%3E%3CDataset%**
> 20name%20=%20%22hsapiens_gene_**ensembl%22%20interface%20=%20%**
> 22default%22%20%3E%3CFilter%**20name%20=%20%22end%22%**
> 20value%20=%20%2210000%22/%3E%**3CFilter%20name%20=%20%**
> 22start%22%20value%20=%20%221%**22/%3E%3CAttribute%20name%20=%**
> 20%22ensembl_gene_id%22%20/%**3E%3CAttribute%20name%20=%20%**
> 22ensembl_transcript_id%22%20/**%3E%3C/Dataset%3E%3C/Query%3E<http://www.biomart.org/biomart/martservice?queryno=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%3C!DOCTYPE%20Query%3E%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22%20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20%22end%22%20value%20=%20%2210000%22/%3E%3CFilter%20name%20=%20%22start%22%20value%20=%20%221%22/%3E%3CAttribute%20name%20=%20%22ensembl_gene_id%22%20/%3E%3CAttribute%20name%20=%20%22ensembl_transcript_id%22%20/%3E%3C/Dataset%3E%3C/Query%3E>
>
> I think they should return a 4xx error.
> What do you think ?
>
> Regards
>
> --
> Sébastien Moretti
> Department of Ecology and Evolution,
> Biophore, University of Lausanne,
> CH-1015 Lausanne, Switzerland
> Tel.: +41 (21) 692 4221/4079
> http://selectome.unil.ch/ http://bgee.unil.ch/
>
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