Hi Alex, The 07 code was released a while ago. I am not even sure if postres 9 was around then
BioMart 08 works with postgres 9 (just double checked v 9.2) Do you think you could use BioMart 08 instead? a On Wed, Dec 19, 2012 at 11:53 AM, Alex Hodgkins <[email protected]> wrote: > Hello, > > When running marteditor on a Postgres 9 database a gzip error occurs when > attempting to save or export: > > Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Could > not lazyload datasetconfig Caught IOException during fetch of requested > DatasetConfig: Not in GZIP format > at > org.ensembl.mart.lib.config.DatasetConfig.lazyLoad(DatasetConfig.java:1844) > at > org.ensembl.mart.lib.config.DatasetConfig.getImportables(DatasetConfig.java:1009) > at > org.ensembl.mart.lib.config.DatabaseDatasetConfigUtils.updateConfigToTemplate(DatabaseDatasetConfigUtils.java:2342) > ... > > This is because the bytea column type has changed its format to 'hex'. > This means that all data returned from bytea fields is in an unexpected > format, causing an error when DatabaseDatasetConfigUtils tries to gunzip > the xml data. > > The solution is to run: > > ALTER DATABASE database_name SET bytea_output TO 'escape'; > > on the postgres 9 database. > > Regards, > Alex > > -- The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a company > registered in England with number 2742969, whose registered office is 215 > Euston Road, London, NW1 2BE. > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
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