Hi Jonas, It appears that the data have been updated on our Portal, however the labelling has not. Please accept my apologies for this confusion.
The BioMart Central Portal only provides the service for the latest Ensembl Data. However, if you are interested in older version I recommend you use Ensembl Archives (available on the Ensmebl site) a On Sun, Jan 27, 2013 at 9:43 PM, Jonas Marcello <[email protected]>wrote: > Hi everyone, > > I just realized that annotations in the Biomart Database have not been > updated to reflect changes at ENSEMBL. > The Dataset is labeled as NCBIM37 (mm9), but the resulting output is > actually NCBIM38 (mm10 dataset) > > Steps to reproduce the isse: > I choose the Gene "Il2" as the coordinates here have changed. > > Navigate to > > http://central.biomart.org/martwizard/#!/Genome?mart=Ensembl+Genes+69+(WTSI%2C+UK)&datasets=mmusculus_gene_ensembl > > Filters: Filters->Gene->ID list limit-> MGI symbol > enter "Il2" (IL2) > > Output: Atributes->Features->Gene->ENSEMBL-> > Activate: > Gene Start (bp) > Gene End (bp) > > Result: > GeneStart: 37120523 > GeneEnd: 37125959 > > > http://central.biomart.org/martwizard/#!/Genome?mart=Ensembl+Genes+69+(WTSI%2C+UK)&datasets=mmusculus_gene_ensembl&step=4&id_list_limit_filters%5B%5D=mgi_symbol&id_list_limit_filters%5B%5D=Il2&id_list_limit_filters%5B%5D=MGI+symbol+%5Be.g.+Gm687%5D&attributes=transcript_start%2Ctranscript_end%2Cend_position%2Cstart_position%2Cchromosome_name%2Cexternal_gene_id > > > > Those results are from the mm10 dataset (verify here: > > http://useast.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000027720;r=3:37120523-37125959;t=ENSMUST00000029275 > > Expected for the mm9 dataset would be: > GeneStart: 37019445 > GeneEnd: 37024881 > > http://may2012.archive.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000027720;r=3:37019445-37024881 > > Is it possible to select the output to reflect a specific assembly? > > Thanks for your help, > > Jonas > > -- > ______________________ > Jonas Marcello > Tarakhovsky lab > The Rockefeller University > 1230 York Ave > New York, NY 10065 > +1-212-327-8265 > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
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