Hi Inigo Please forward your query to [email protected] and we will be able to help you. Regards Rhoda
On 31 Jan 2013, at 11:45, Inigo Martincorena <[email protected]> wrote: > Hi, > > I have been trying to use BioMart to obtain a list of all the protein coding > transcripts of the current version of the human genome. In particular, I am > interested in the start and end position of all exons, but excluding > non-coding exonic sequences (i.e. excluding UTRs). > > What is the easier way of obtaining this? Or should I use Ensembl API? > > So far I have retrieved all exonic starts and ends from BioMart (Exon Start > (bp)...), but these include UTRs. Combining these coordinates with other > information from BioMart I have managed to get what I wanted after quite a > bit of coding. But I was wondering whether I was missing an easier way of > getting this information directly from BioMart. > > Thanks, > Inigo > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a > charity registered in England with number 1021457 and a company registered in > England with number 2742969, whose registered office is 215 Euston Road, > London, NW1 2BE. _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users Rhoda Kinsella Ph.D. Ensembl Production Project Leader, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
