Viktor, Its a bit more that just the reading frames that you need to accurately translate exonic sequences in protein, for instance, you would need UTR info, initial methionine substitutions, selenocysteine substitutions etc. Biomart can give you the end product as peptides after combining all exons though. Its on the same Sequence page, but exon-wise translation is missing indeed. Unfortunately, I do not know which other website can help you with this, but a starting point could be to look at the CDS section on UCSC website here:
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html HTH, Syed On 5 March 2013 12:25, Viktor Granholm <[email protected]> wrote: > Hi BioMart-list, > I'd like to obtain protein sequences of human exons, so using BioMart > version 0.7 I chose Homo sapiens from 'Ensembl genes 69' and used the > attribute "Exon sequences". This gives me the DNA sequences of all exons. To > convert these to proteins, is there an attribute for obtaining the frame of > the translation? Or could somebody recommend any other way for getting > protein exon sequences? > Thank you, > Viktor > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
