Hi Kathleen, I am forwarding your question to the users mailing list to seek help from Ensembl experts.
Rhoda: are you planning to make the attribute that Kathleen is after available at some point? cheers, a On 5 April 2013 17:41, kathleen askland <[email protected]> wrote: > Hi Arek, > I'm using the regular biomart portal: http://central.biomart.org/ > I choose: Database>Gene Annotation>Hugo Gene Nomenclature (HGNC) (EBI, > UK), then choose Dataset: HGNC data. > Once HGNC data (dataset) is chosen, I click 'Next' which brings me to the > filter selection screen. I don't want to filter, I want all symbols, so I > make no filtering selection. I click 'Next' again, which brings me to the > Attributes selection screen. I can select 'Approved Name' and 'Previous > Symbols,' but not 'Approved Symbol' (or any option for active symbols.) So, > I make my selections and, regardless of what I choose (I tried several > different times), I do not get output with the current, approved symbols. > (I will be on vacation from today through 4/15, so if I don't respond > right away, that is why.) > Thanks for your help. > Kathleen > > > On Fri, Apr 5, 2013 at 4:54 AM, Arek Kasprzyk <[email protected]>wrote: > >> Hi Kathleen, >> which BioMart portal are you using? Could you describe it to me please >> and send me the URL? >> >> cheers, >> a >> >> >> On 26 March 2013 18:24, kathleen askland <[email protected]> wrote: >> >>> Hello, >>> I am attempting to download the full set of HGNC gene symbols (as well >>> as some additional information such as HGNC id, locus type, status, etc...) >>> through BioMart,Database: Hugo Gene Nomenclature (HGNC) (EBI, UK), Dataset: >>> HGNC data. However, I'm puzzled by the fact that HGNC gene symbol does not >>> appear to be one of the output features available for selection. I can >>> choose the HGNC id and the 'Approved Name' (which is the full HGNC >>> descriptive gene name), but not the symbol. >>> Any suggestions? >>> Kathleen >>> >>> -- >>> *‘It ain’t what you don’t know that gets you into trouble. It’s what >>> you know for sure that just ain’t so.’* -Mark Twain >>> --- >>> Kathleen Askland, MD >>> Assistant Professor >>> Department of Psychiatry & Human Behavior >>> Warren Alpert School of Medicine >>> Brown University/Butler Hospital >>> >> >> > > > -- > *‘It ain’t what you don’t know that gets you into trouble. It’s what you > know for sure that just ain’t so.’* -Mark Twain > --- > Kathleen Askland, MD > Assistant Professor > Department of Psychiatry & Human Behavior > Warren Alpert School of Medicine > Brown University/Butler Hospital >
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