Hello,
For several releases I have been getting an error when trying to link
the Ensembl Genes biomart to the UniProt Biomart. Like wise, InterPro
are experiencing the same issue when trying to link the UniProt biomart
to their own.
We are both using Biomart v0.7. I contacted Ensembl and retrieve the
most recent information for the registry.xml
*
<MartURLLocation
host="www.ensembl.org"
database="ensembl_mart_70"
name="ENSEMBL_MART_ENSEMBL"
path="/biomart/martservice"
serverVirtualSchema="default"
displayName="ENSEMBL GENES 70(EBI UK)"
port="80"
visible="1"
default="1"
includeDatasets=""
martUser=""
/>
*
When I run the command, perl bin/configure.pl --clean -r
conf/uniprot_registry.xml, I receive the message below:
Connection parameters of [UniProtKB Unimart (EBI UK)] [ OK ]
Connection parameters of [ENSEMBL GENES 70(EBI UK)] [ OK ]
Connection parameters of [INTERPRO (EBI UK)] [ OK ]
Connection parameters of [PRIDE (EBI UK)] [ OK ]
Problems with the web server: 500 Can't connect to www.ensembl.org:80
(connect: timeout)
Any help or tips for troubleshooting would be appreciated.
Regards,
Steve
--
Steven Rosanoff
Software Engineer
EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD, UK
Phone: +44 (0)1223 494565
Email: [email protected]
Learn more about EBI at: http://www.ebi.ac.uk
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