Hi Maja Have you tried using the Ensembl BioMart databases at www.ensembl.org? If not, can you try the databases there and let me know if you have any difficulty.
Here is the link to the current Ensembl release 71 biomart databases which contains GRCm38: http://www.ensembl.org/biomart/martview/ Here is the link to the page that lists all our past archives: http://www.ensembl.org/info/website/archives/index.html Ensembl release 67 was the last release to contain NCBIM37 I hope that helps Regards Rhoda On 30 Apr 2013, at 19:47, Maja Milojevic <[email protected]> wrote: > Hi, > > I'm using the Ensembl Genes 69 database with the mouse dataset (build 37) and > I would like to get a list of all the exons in the mouse but I can't get a > consistent output. Almost every time that I click on the results button I get > a different number of results even though all the filter and output settings > are unchanged. The only exception has been chromosome 1 which is usually > consistent. I have also retrieved the exon list for the mouse build 38 > through BioMart MartView and I have had no problems with getting consistent > output. However, I can't work with build 38 right now and I'm struggling to > figure out what is going wrong when I use the BioMart Central Portal. > > Any help would be appreciated, > > Maja _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users Rhoda Kinsella Ph.D. Ensembl Production Project Leader, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
