Hi can anybody confirm my current problems on ensembl biomaRt service?
Executing the following query I get an DB error message.
require(biomaRt)
ensembl <- useMart("ensembl", dataset = "mmusculus_gene_ensembl")
biomart_data <- getBM(
attributes=c("ensembl_gene_id",
"ensembl_transcript_id",
"entrezgene",
"mgi_symbol"),
filter="entrezgene",
values=c("1","2"),
mart=ensembl)
Error in getBM(attributes = c("ensembl_gene_id", "ensembl_transcript_id",
:
Query ERROR: caught BioMart::Exception::Database: Could not connect to
mysql database ensembl_mart_71: DBI
connect('database=ensembl_mart_71;host=bm_mysql;port=3306','bmweb',...)
failed: Host '54.225.80.241' is blocked because of many connection errors;
unblock with 'mysqladmin flush-hosts' at /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98
--
Stefan
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