On 19 May 2015, at 21:03, Comer Duncan <[email protected]> wrote:
> I have tried to build the new release on my local macbook. I am running
> Yosemite and am using the optionlist for macports. Here is the part of the
> make which chokes:
> .
> .
> .
> Undefined symbols for architecture x86_64:
> "MPI::Win::Free()", referenced from:
> vtable for MPI::Win in libthorn_PeriodicCarpet.a(periodic.cc.o)
> vtable for MPI::Win in libthorn_Carpet.a(helpers.cc.o)
> vtable for MPI::Win in
> libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
> vtable for MPI::Win in libthorn_CarpetIOASCII.a(ioascii.cc.o)
> vtable for MPI::Win in libthorn_CarpetIOBasic.a(iobasic.cc.o)
> vtable for MPI::Win in libthorn_CarpetIOHDF5.a(Input.cc.o)
> vtable for MPI::Win in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> ...
> "MPI::Comm::Comm()", referenced from:
> MPI::Intercomm::Merge(bool) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Intracomm::Split(int, int) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Intracomm::Create(MPI::Group const&) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Graphcomm::Clone() const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Cartcomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Intracomm::Clone() const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const
> in libthorn_PeriodicCarpet.a(periodic.cc.o)
> ...
> "MPI::Datatype::Free()", referenced from:
> vtable for MPI::Datatype in libthorn_PeriodicCarpet.a(periodic.cc.o)
> vtable for MPI::Datatype in libthorn_Carpet.a(helpers.cc.o)
> vtable for MPI::Datatype in
> libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
> vtable for MPI::Datatype in libthorn_CarpetIOASCII.a(ioascii.cc.o)
> vtable for MPI::Datatype in libthorn_CarpetIOBasic.a(iobasic.cc.o)
> vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(Input.cc.o)
> vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> ...
> "_ompi_mpi_cxx_op_intercept", referenced from:
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_PeriodicCarpet.a(periodic.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_Carpet.a(helpers.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_CarpetIOASCII.a(ioascii.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_CarpetIOBasic.a(iobasic.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)
> MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&),
> bool) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> ...
> ld: symbol(s) not found for architecture x86_64
> collect2: error: ld returned 1 exit status
> make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim] Error 1
> make: *** [sim] Error 2
>
> Here is the build I did:
>
> simfactory/bin/sim build
> --optionlist=/Users/comerduncan/Cactus/simfactory/mdb/optionlists/osx-macports.cfg
>
> Can you please help me figure out what went wrong?
Hi Comer,
My guess would be that there might be more than one version of MPI installed,
or something in the MPI configuration script didn't work quite right. Did you
install all the ports recommended in the comment in the os-macports.cfg
optionlist? Can you post the output from the full build? I suggest to remove
the configuration
rm -rf configs/sim
and then build, keeping all output:
simfactory/bin/sim build --optionlist=osx-macports.cfg >build.log 2>&1
You could then copy and paste build.log into http://pastebin.com and include
the link in your reply (to avoid having a large attachment on the mailing list).
--
Ian Hinder
http://members.aei.mpg.de/ianhin
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