Lucy Have you tried using the Einstein Toolkit on Queen Bee, as suggested here < https://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users>?
-erik On Tue, Sep 6, 2016 at 11:56 AM, L.S. Oswald <[email protected]> wrote: > Dear Erik > > In general I've been using the commands at https://docs.einsteintoolkit.o > rg/et-docs/Simplified_Tutorial_for_New_Users. I have tried configuring > with the debian.cfg file and also attempted creating my own configuration > file. Moving onto a different computer solved my MPI issue but produced a > new error, which I've written about in my reply to Rahul. I'm afraid I > don't know what type of computer I'm using now but I should be able to find > out tomorrow. > > Hopefully my other email gives an overview of my latest problem. I attach > the full log of the output received when building the toolkit. > > Many thanks for your help, > > Lucy > > > On 2016-09-06 5:41 pm, Erik Schnetter wrote: > >> Lucy >> >> The Simulation Factory has several example option lists for Cray >> systems; look e.g. at bluewaters or edison. I don't recommend changing >> the "config-info" file, since this file will be overwritten. Instead, >> you can set such options in your option list. >> >> If you need more help, then we'll need more details: What kind of Cray >> system is this? What options did you pass when you configured the >> Einstein Toolkit? What output did you receive while configuring? etc. >> >> -erik >> >> On Mon, Aug 29, 2016 at 12:47 PM, L.S. Oswald <[email protected]> wrote: >> >> Hello >>> >>> I'm attempting to install the Einstein Toolkit on Dora, which is a >>> Cray >>> system supercomputer. In doing so I came across the following >>> error: >>> >>> Configuration script for thorn MPI returned exit code 5 >>> Error message: 'MPI could not be configured: neither >>> automatic nor >>> manual configuration succeeded' >>> >>> In addition the log stated that: >>> No MPI compiler wrapper found beneath MPI_DIR (MPI_DIR = >>> /usr) >>> >>> I subsequently discovered that it was looking in the wrong place >>> for the >>> MPI root directory and that the reason it was looking under /usr >>> instead >>> of /opt/cray/mpt/7.3.2/gni/mpich-cray/8.3 was because that was the >>> setting in the ubuntu configuration file that I had used when >>> configuring SimFactory. On a reattempt therefore I did not use the >>> ubuntu.cfg file when configuring SimFactory, and got the following >>> error >>> instead: >>> >>> Configuring with flesh MPI >>> Warning: use of flesh MPI via MPI option is deprecated and >>> should be replaced with the thorn ExternalLibraries/MPI and its >>> MPI_DIR >>> option >>> MPI selected, but no known MPI method - what is >>> "/opt/cray/mpt/7.3.2/gni/mpich-cray/8.3" ? >>> >>> Attempts at altering the Makefile and the config-info file resulted >>> in >>> either no change, or more errors. >>> >>> Please would you be able to advise me on the correct way to specify >>> the >>> root directory for MPI? >>> >>> Many thanks, >>> >>> Lucy Oswald >>> _______________________________________________ >>> Users mailing list >>> [email protected] >>> http://lists.einsteintoolkit.org/mailman/listinfo/users [1] >>> >> >> -- >> >> Erik Schnetter <[email protected]> >> http://www.perimeterinstitute.ca/personal/eschnetter/ [2] >> >> Links: >> ------ >> [1] http://lists.einsteintoolkit.org/mailman/listinfo/users >> [2] http://www.perimeterinstitute.ca/personal/eschnetter/ > > -- Erik Schnetter <[email protected]> http://www.perimeterinstitute.ca/personal/eschnetter/
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