Dear Chia-Hui, I noticed at the bottom of your .out file the following line:
> INFO (TerminationTrigger): Remaining wallclock time for your job is 57.5667 minutes. Triggering termination... It appears that for some reason, TerminationTrigger is terminating your run. I updated the .par files to properly document the relevant TerminationTrigger parameters. You could also try disabling TerminationTrigger completely, as this should prevent the code from terminating. -Zach * * * Zachariah Etienne Assistant Professor of Mathematics West Virginia University *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>* https://blackholesathome.net On Thu, Jul 19, 2018 at 2:36 PM, 林家暉 <[email protected]> wrote: > Dear Zach, > Thank a lot for your updating. The previous errors are solved. However the > code exits after 3 minutes running. The attached files are the > corresponding .err and .out files. I am not sure whether it is caused by > ML_BSSN > parameters. > Also thanks for inviting me to the IllinoisGRMHD Working Group telecon. I > would like to attend and I have selected possible time. > > Best regards, > Chia-Hui > ------------------------------ > *寄件者:* Zach Etienne <[email protected]> > *寄件日期:* 2018年7月20日 上午 01:31:50 > *收件者:* 林家暉 > *副本:* Einstein Toolkit Users > *主旨:* Re: [Users] error after activating IllinoisGRMHD and > VolumeIntegrals_GRMHD > > Dear Chia-Hui, > > Thank you for your report! I just updated the parameter files to fix these > issues (sorry, I should've checked earlier), and they seem to run fine now > when using the latest Einstein Toolkit release, ET_2018_02. There may be > some remaining warnings about ML_BSSN parameters, but these may be safely > ignored. > > Please consider attending the next IllinoisGRMHD Working Group telecon > next Thursday or Friday; respond to http://whenisgood.net/pfjbm3c if you > are interesting in attending. > WhenIsGood: July 2018 IllinoisGRMHD telecon > <http://whenisgood.net/pfjbm3c> > whenisgood.net > Plan the time to have your meeting or event by co-ordinating availability > with all the particpants using this fuss-free online tool. > > > -Zach > > * * * > Zachariah Etienne > Assistant Professor of Mathematics > West Virginia University > *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>* > https://blackholesathome.net > > On Thu, Jul 19, 2018 at 9:30 AM, 林家暉 <[email protected]> wrote: > >> Dear Zach, >> Thank you for updating the parameter file. But I have several questions : >> 1.It seems some name of parameters should be changed, >> from VolumeIntegrals_GRMHD::volintegral_inside_sphere__center_x_initial >> to VolumeIntegrals_GRMHD::volintegral_sphere__center_x_initial >> and >> from VolumeIntegrals_vacuum::volintegral_inside_sphere__trac >> ks__amr_centre >> to VolumeIntegrals_vacuum::amr_centre__tracks__volintegral_inside_sphere >> >> 2. There is an error message for this parameter IllinoisGRMHD::Symmetry >> = 0: >> >> in thorn IllinoisGRMHD, file nsns_test.par:78: >> -> Invalid assignment: Attempting to set a variable of type KEYWORD with >> (INT)0 >> >> >> I tried to change 0 to "no", another error message appeared: >> >> ParameterSetKeyword: Unable to set keyword 'IllinoisGRMHD::Symmetry', new >> value 'no' is not in any active range >> >> 3.For parameter IOUtil::checkpoint_dir= ABEoutput_directory-$parfile >> >> There is an error message: >> >> in thorn IOUtil, file nsns_test.par:388: >> -> Unknown add operator: - >> Interpreting as literal string with value 'ABEoutput_directory-nsns_test' >> >> I met obove problems when I executed the code.How could I modify? >> Thank you very much. >> >> Best regards, >> Chia-Hui >> >> ------------------------------ >> *寄件者:* Zach Etienne <[email protected]> >> *寄件日期:* 2018年7月18日 下午 09:07:46 >> >> *收件者:* 林家暉 >> *副本:* Einstein Toolkit Users >> *主旨:* Re: [Users] error after activating IllinoisGRMHD and >> VolumeIntegrals_GRMHD >> >> Dear Chia-Hui, >> >> Thanks so much for sending the error message. Based on the file you sent, >> I was able to push a few bugfixes to the WVUThorns_Diagnostics arrangement. >> >> I also updated the example parameter files and moved them to a new >> location: >> wvuthorns_diagnostics/NSNS_parameter_files >> >> You'll find that nsns_test.par has been updated as well. >> >> Please grab the latest wvuthorns_diagnostics git repo. I'd suggest >> comparing the updated nsns_test.par to the version you sent me and >> modifying as needed so that your neutron stars are properly centered >> (you'll need to replace +/- "20.319527" with the locations of the neutron >> stars in your initial data). >> >> Thanks again, and let me know if you run into further troubles. >> >> -Zach >> >> * * * >> Zachariah Etienne >> Assistant Professor of Mathematics >> West Virginia University >> *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>* >> https://blackholesathome.net >> >> On Wed, Jul 18, 2018 at 2:26 AM, 林家暉 <[email protected]> wrote: >> >>> Dear Zach, >>> I modified nsns_test.par as the attached file by replacing >>> VolumeIntegrals with VolumeIntegrals_GRMHD and remove the line using >>> centeroflapse >>> which is for VolumeIntegrals_vacuum. Then I got the error message as >>> the attached file.What else should I modify? >>> By the way , my ETK version is ET_2018_02. >>> On the other hand,I am still trying to use illinoisGRMHD in the gallery >>> example (nsnstohmns.par),but not yet success. I haven't come up with ideal >>> how to make it compatible with IllinoisGRMHD. >>> Thanks, >>> Best regards, >>> Chia-Hui >>> ------------------------------ >>> *寄件者:* Zach Etienne <[email protected]> >>> *寄件日期:* 2018年7月18日 上午 03:17:53 >>> >>> *收件者:* 林家暉 >>> *副本:* Einstein Toolkit Users >>> *主旨:* Re: [Users] error after activating IllinoisGRMHD and >>> VolumeIntegrals_GRMHD >>> >>> Dear Chia-Hui, >>> > Does this mean that I should update the parameter file in order to use >>> them ? >>> >>> Yes, though this should be simple. I would expect that simply replacing >>> all references to VolumeIntegrals by references to VolumeIntegrals_GRMHD >>> will fix the problem. >>> >>> > I have already produced some initial data by LORENE. >>> >>> Great to hear. You will need to modify the parameter file so that the >>> AMR grid structures are properly centered on each neutron star initially. >>> >>> > Can I consult for your suggestion that which method would be more >>> efficient and proper without tracking problem? Or there are other possible >>> solution? >>> >>> I am unsure what advice would be best. You have told me is that the code >>> exits unexpectedly. To help diagnose, I will need to know the exact version >>> of the ETK you are using and the error message. >>> >>> -Zach >>> >>> * * * >>> Zachariah Etienne >>> Assistant Professor of Mathematics >>> West Virginia University >>> *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>* >>> https://blackholesathome.net >>> >>> On Tue, Jul 17, 2018 at 10:18 AM, 林家暉 <[email protected]> wrote: >>> >>>> Dear Zach, >>>> It seems that none parameter file in https://bitbucket.org/zach_ >>>> etienne/wvuthorns_diagnostics/src/a7dfd31684ba/Meudon_Bin_NS >>>> -modified/par/?at=master uses VolumeIntegrals_GRMHD but use VolumeIntegrals >>>> instead. Does this mean that I should update the parameter file in order to >>>> use them ? >>>> My main goal is to simulate binary neutron star with unequal mass, >>>> and I have already produced some initial data by LORENE. It seems now I >>>> have two options. First is to modify (update) one of the parameter files >>>> above(e.g. nsns_test.par ) and second is significantly modify >>>> nsnstohmns.par in the gallery. Can I consult for your suggestion that >>>> which method would be more efficient and proper without tracking problem? >>>> Or there are other possible solution? >>>> >>>> Thank you. >>>> Best regards, >>>> Chia-Hui >>>> ------------------------------ >>>> *寄件者:* Zach Etienne <[email protected]> >>>> *寄件日期:* 2018年7月17日 下午 09:53:20 >>>> >>>> *收件者:* 林家暉 >>>> *副本:* Einstein Toolkit Users >>>> *主旨:* Re: [Users] error after activating IllinoisGRMHD and >>>> VolumeIntegrals_GRMHD >>>> >>>> Dear Chia-Hui, >>>> >>>> > Is there a thorn called VolumeIntegrals ? >>>> >>>> No, there isn't, and this *might* be evidence that the parameter file >>>> you chose is outdated (try to find one that depends on >>>> VolumeIntegrals_GRMHD): the old "VolumeIntegrals" thorn was split into the >>>> VolumeIntegrals_GRMHD and VolumeIntegrals_vacuum thorns. The former can use >>>> IllinoisGRMHD gridfunctions and the latter can use McLachlan gridfunctions. >>>> VolumeIntegrals_GRMHD is used to find the center of masses of the >>>> neutron stars so their motion can be tracked by the AMR grids. >>>> >>>> > And I am curious about: what is the main difference between the >>>> parameter file (nsnstohmns.par) in the gallery example and nsns_test.par ? >>>> >>>> The nsns_test.par is designed to evolve the "Missing Link" case ( >>>> https://arxiv.org/abs/1101.4298), which is probably different than the >>>> gallery example. To run this case, you'll need to use the LORENE initial >>>> data file here (credit: Meudon group; you can find this case on the LORENE >>>> website -- https://lorene.obspm.fr/ -- as well, but you'll need to >>>> hunt for it): >>>> http://math.wvu.edu/~zetienne/resu.d >>>> >>>> -Zach >>>> >>>> * * * >>>> Zachariah Etienne >>>> Assistant Professor of Mathematics >>>> West Virginia University >>>> *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>* >>>> https://blackholesathome.net >>>> >>>> On Tue, Jul 17, 2018 at 9:26 AM, 林家暉 <[email protected]> wrote: >>>> >>>>> Dear Zach, >>>>> >>>>> Sorry for late reply. I have tried one of the parameter file you >>>>> mentioned ( nsns_test.par ). I have a question for this file that the >>>>> thorn VolumeIntegrals should be activated but I can only find >>>>> VolumeIntegrals_GRMHD >>>>> and VolumeIntegrals_vacuum. After I tried both thorns, I chose >>>>> VolumeIntegrals_GRMHD(that is, I change all VolumeIntegrals into >>>>> VolumeIntegrals_GRMHD >>>>> in the nsns_test.par).However the code stopped after several minutes >>>>> running. So what I want to ask is: Is there a thorn called >>>>> VolumeIntegrals ? >>>>> Since I cannot find after searching and I think it is the reason >>>>> terminating the code. >>>>> >>>>> And I am curious about: what is the main difference between the >>>>> parameter file (nsnstohmns.par) in the gallery example and nsns_test.par >>>>> ? >>>>> >>>>> >>>>> Thank you. >>>>> >>>>> Best regards, >>>>> >>>>> Chia-Hui >>>>> ------------------------------ >>>>> *寄件者:* Zach Etienne <[email protected]> >>>>> *寄件日期:* 2018年7月14日 上午 02:41:24 >>>>> >>>>> *收件者:* 林家暉 >>>>> *副本:* Einstein Toolkit Users >>>>> *主旨:* Re: [Users] error after activating IllinoisGRMHD and >>>>> VolumeIntegrals_GRMHD >>>>> >>>>> Hi Chia-Hui, >>>>> >>>>> If you really want to use VolumeIntegrals_GRMHD, you are more than >>>>> welcome to do so. However, the parameter file you are using from the >>>>> examples gallery will need to be significantly modified to be compatible >>>>> with IllinoisGRMHD. My immediate thought (which may be correct or >>>>> incorrect) is that it is attempting to initialize both GRHydro and >>>>> IllinoisGRMHD simultaneously. >>>>> >>>>> If you want to use IllinoisGRMHD, the easiest route would be to start >>>>> with a parameter file in the following wvuthorns_diagnostics directory: >>>>> https://bitbucket.org/zach_etienne/wvuthorns_diagnostics/src >>>>> /master/Meudon_Bin_NS-modified/par/ >>>>> >>>>> I haven't had time yet to fully set up a gallery example for this BNS >>>>> case, so beware: you may need to modify the parameter file a bit to make >>>>> it >>>>> work properly. I'm hoping to schedule the next IllinoisGRMHD Working Group >>>>> telecon in the next few weeks, so please stay tuned if you are interested. >>>>> >>>>> -Zach >>>>> >>>>> * * * >>>>> Zachariah Etienne >>>>> Assistant Professor of Mathematics >>>>> West Virginia University >>>>> http://math.wvu.edu/~zetienne/ >>>>> http://blackholesathome.net >>>>> >>>>> On Fri, Jul 13, 2018 at 11:50 AM, 林家暉 <[email protected]> wrote: >>>>> >>>>>> Dear Zach, >>>>>> Becasue if I only activate VolumeIntegrals_GRMHD but not IllinoisGRMHD >>>>>> , there will be following error in the .out file: >>>>>> >>>>>> Error: Implementation 'ILLINOISGRMHD' not activated. >>>>>> This implementation is required by activated thorn(s): >>>>>> VolumeIntegrals_GRMHD (implementing VolumeIntegrals_GRMHD) >>>>>> This implementation is provided by compiled thorn(s): >>>>>> IllinoisGRMHD >>>>>> Add a thorn providing this implementation to the ActiveThorns >>>>>> parameter. >>>>>> Activation failed - 1 errors in activation sequence >>>>>> >>>>>> It seems it is required to activate IllinoisGRMHD in order to use >>>>>> VolumeIntegrals_GRMHD. >>>>>> >>>>>> Thanks, >>>>>> Chia-Hui >>>>>> ------------------------------ >>>>>> *寄件者:* Zach Etienne <[email protected]> >>>>>> *寄件日期:* 2018年7月13日 下午 09:04:30 >>>>>> *收件者:* 林家暉 >>>>>> *副本:* Einstein Toolkit Users >>>>>> *主旨:* Re: [Users] error after activating IllinoisGRMHD and >>>>>> VolumeIntegrals_GRMHD >>>>>> >>>>>> Hi Chia-Hui, >>>>>> >>>>>> Is there a reason you are using IllinoisGRMHD for this particular >>>>>> example? The example was written for GRHydro. >>>>>> >>>>>> -Zach >>>>>> >>>>>> * * * >>>>>> Zachariah Etienne >>>>>> Assistant Professor of Mathematics >>>>>> West Virginia University >>>>>> http://math.wvu.edu/~zetienne/ >>>>>> http://blackholesathome.net >>>>>> >>>>>> On Thu, Jul 12, 2018 at 11:35 PM, 林家暉 <[email protected]> wrote: >>>>>> >>>>>>> Dear whom it may concern, >>>>>>> I tried to solve the tracking problem of unequal mass binary neutron >>>>>>> (http://einsteintoolkit.org/gallery/bns/index.html ) star by using >>>>>>> the thorn WVUThorns_Diagnostics / VolumeIntegrals_GRMHD . Therefore >>>>>>> I activate both IllinoisGRMHD and VolumeIntegrals_GRMHD. However I >>>>>>> met the error which showed in both .err file and .out file. >>>>>>> >>>>>>> In .err file: >>>>>>> Thu Jul 12 08:03:04 2018: [unset]:_pmi_alps_init:alps_get_placement_info >>>>>>> returned with error -1 >>>>>>> Thu Jul 12 08:03:04 2018: [unset]:_pmi_init:_pmi_alps_init returned >>>>>>> -1 >>>>>>> >>>>>>> In .out file: >>>>>>> INFO (IllinoisGRMHD): Font fix failed! >>>>>>> INFO (IllinoisGRMHD): i,j,k = 78 31 41, stats.failure_checker = >>>>>>> 10000 x,y,z = -1.800000e+01 -7.593750e+00 1.068750e+01 , index=574610 >>>>>>> st_i >>>>>>> = -nan -nan -nan, rhostar = 2.902693e+243, Bi = 0.000000e+00 >>>>>>> 0.000000e+00 >>>>>>> 0.000000e+00, gij = 1.295702e+00 0.000000e+00 0.000000e+00 1.295702e+00 >>>>>>> 0.000000e+00 1.295702e+00, Psi6 = 1.474883e+00 >>>>>>> INFO (IllinoisGRMHD): Couldn't find root from: -nan 2.902693e+243 >>>>>>> -nan -nan -nan, rhob approx=1.968084e+243, rho_b_atm=1.000000e+200, >>>>>>> Bx=0.000000e+00, By=0.000000e+00, Bz=0.000000e+00, gij_phys=1.295702e+00 >>>>>>> 0.000000e+00 0.000000e+00 1.295702e+00 0.000000e+00 1.295702e+00, >>>>>>> alpha=8.746533e-01 >>>>>>> >>>>>>> I am not sure what these error exactly mean and how to solve it. >>>>>>> >>>>>>> Thanks. >>>>>>> Chia-Hui >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Users mailing list >>>>>>> [email protected] >>>>>>> http://lists.einsteintoolkit.org/mailman/listinfo/users >>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
_______________________________________________ Users mailing list [email protected] http://lists.einsteintoolkit.org/mailman/listinfo/users
