Hello Bernard, > I did a clean, from-scratch compilation after copying that 18.2.0 > Darwin architecture file to 18.6.0. > > Sadly, no change. Still fails at link time with all the "Undefined > _H5xxxx" errors. Ok. Since it starts with at "_" I almost suspected it may be some Fortran binding but then it is being called from C++ code.
My own test is still compiling (slow VM). Could you include the output of: * sudo port installed * uname -a I have included my own output to give you an idea of what I am looking for (note that I cannot tell yet if compiling in my VM will encounter the same error you see). Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
The following ports are currently installed: bzip2 @1.0.6_0 (active) cctools @921_1+llvm70 cctools @921_2+llvm70 (active) fftw-3 @3.3.8_0 (active) gcc8 @8.3.0_0 gcc8 @8.3.0_4 (active) gcc_select @0.1_8 (active) gettext @0.19.8.1_0 gettext @0.19.8.1_2 (active) gmp @6.1.2_1 (active) gsl @2.5_1 (active) hdf5 @1.10.5_0+cxx+fortran+gfortran+hl (active) hwloc @1.11.8_0 (active) icu @58.2_2 (active) isl @0.20_0 isl @0.21_0 (active) jpeg @9c_0 (active) ld64 @3_1+ld64_xcode (active) ld64-xcode @2_1 (active) libcxx @5.0.1_4 (active) libedit @20181209-3.1_0 libedit @20190324-3.1_0 (active) libffi @3.2.1_0 (active) libgcc @1.0_0 libgcc @2.0_1 (active) libgcc8 @8.3.0_0 libgcc8 @8.3.0_5 (active) libgcc9 @9.1.0_1 libgcc9 @9.1.0_2 (active) libiconv @1.15_0 libiconv @1.16_0 (active) libmpc @1.1.0_1 (active) libxml2 @2.9.9_0 libxml2 @2.9.9_1 (active) llvm-7.0 @7.0.1_1 (active) llvm_select @2_0 (active) mpfr @4.0.2_0 (active) mpi-doc @3.3_0 (active) mpi_select @0.0_3 (active) ncurses @6.1_0 (active) openmpi @3.0.0_0 openmpi @4.0.1_0 (active) openmpi-default @3.0.0_0+gcc8 openmpi-default @4.0.1_0+gcc8 (active) openssl @1.0.2r_0 openssl @1.0.2s_0 (active) pkgconfig @0.29.2_0 (active) xar @1.6.1_0 (active) xz @5.2.4_0 (active) zlib @1.2.11_0 (active)
Darwin Jenkinss-MacBook-Pro.local 18.6.0 Darwin Kernel Version 18.6.0: Thu Apr 25 23:16:27 PDT 2019; root:xnu-4903.261.4~2/RELEASE_X86_64 x86_64
pgpl6ELmtIt7x.pgp
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