Hello Shamim Haque, > I have done it successfully once with OpenMPI-x86_64 in our cluster, but it > turns out this MPI is only available in the login node and not available on > computing nodes, hence, I am not able to use it once a job is submitted in > the queue. This is something you should bring up with the cluster admins. Having MPI only on the login nodes but not on the compute nodes makes no sense since MPI is an inter-node communication library.
> I could not figure out the issue here. It seems > */usr/include/openmpi-x86_64/openmpi/ompi/mpi > *is being taken by ET from somewhere and it is not taking OpenMPI 2.1.0. My guess based on the error message being about MPI C++ bindings is that the issue is similar to this recent ET ticket: https://bitbucket.org/einsteintoolkit/tickets/issues/2578/kranc-cactus-and-mpi-linking-issues namely you have to manually set MPI_LIBS in you option list to include mpi_cxx (or the equivalent name for your cluster). You can find out the other libraries to include by quetying mpic++: mpic++ -showme:link which will output the MPI_LIB_DIRS setting (the directory after -L) and the libraries afterwards (you need to remove the -l to get the actual name) and use mpic++ -showme:compile to similarly get the directory to put into the MPI_INC_DIRS variable. You should then set MPI_DIR to the directory containing bin/mpic++ Ie if "which mpic++" returns /usr/local/openmpi/bin/mpic++ you would use /usr/local/openmpi Note that OpenMPI 2.1 is somewhat old (from 2019) and no longer among the supported releases by the OpenMPI team, so you may also ask the admins if there is any newer version available. Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
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