Hello Tomas, This is unfortunately a reasonably common occurrence if the modules / OS do not set all paths or LD_LIBRARY_PATH.
Usually we fix this by setting --rpath options ion lDFLAGS. See eg https://bitbucket.org/simfactory/simfactory2/src/master/mdb/optionlists/supermucng.cfg Note: generic is really designed for local workstations and may not work well on a cluster (certainly generic.sub will not since it does not use any queuing system). See eg http://einsteintoolkit.org/seminars/2022_02_24/index.html for a presentation on how to set up on a new cluster. It links to more documentation in the jupyter notebook that is used for the presentation. By "exporting the paths" you mean something like: export LD_LIBRARY_PATH=path-to-directory-containing-libfabrics ? If so then the --rpath option above does something similar but only for the single executable that is being linked (so nicer to your environment). Yours, Roland > Hi, > > I’m installing the toolkit in this machine > https://urldefense.com/v3/__https://www.nlhpc.cl/infraestructura/__;!!DZ3fjg!5gnjWSa9ZzG2iMI8bsCxS7PUlgywosfVxZpIWd52b3iaHWUAy6X8tvbQYEifvByS2vJ8K4e4GJo9olbz9Pwm$ > . The documentation is in spanish but > the relevant specs are: > > 128 nodes HPE ProLiant SL230s Gen8 > each node with two CPUs Intel Xeon E5-2660 v2 > OS: CentOS 7 > > I am able to compile using the generic.cfg file, loading the following > modules > > GCCcore/8.2.0 > GCC/8.2.0-2.31.1 > icc/2019.2.187-GCC-8.2.0-2.31.1-nlhpc > impi/2019.2.185 > imkl/2019.2.187 > Szip/2.1.1 > HDF5/1.10.6 > binutils/2.32 > zlib/1.2.11 > OpenMPI/3.1.3 > hwloc/2.4.1 > > However, if I try to run a simulation I get errors: > > - error while loading shared libraries: libifport.so.5: cannot open shared > object file: No such file or directory > - and similarly error while loading shared libraries: libfabric.so.1 > > After some googling, I managed to fix these errors by exporting the paths > of the files libifport.so.5, libfabric.so.1 but this seems a bit > strange and I am wondering if I can instead get the code to work by loading > the correct modules only. > > Any thoughts? > > Thank you! > Tomas > -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://keys.gnupg.net.
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