Thank you Roland for your reply, I was just watching your Youtube video "Introduction to the Einstein Toolkit", so seeing your name pop up was a bit of a surprise!!
I believe that I had previously done everything required and followed all of the install instructions properly. But I have now gone through them all again and still have the same problem. I have attached the config file you mentioned but it doesn't seem to give any more details that are spooled in the Jupyter notebook when I run it. Regards Rob On Mon, 7 Aug 2023 at 14:50, Roland Haas <rh...@illinois.edu> wrote: > Hello Bob, > > You said you followed the jupyter tutorial and the log output would > seem to indicate that you did, but just to be sure: did you make sure > to install the prerequisites listed on > > > https://github.com/einsteintoolkit/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb > > ie for a Mac: > > --8<-- > On Mac, please first > > Install Xcode from the Apple App Store. In addition agree to Xcode > license and install the Xcode Command Line Tools in Terminal > > sudo xcodebuild -license > sudo xcode-select --install > > when using MacPorts > install MacPorts for your version of the Mac operating system, if > you have not already installed it (https://www.macports.org/install.php). > Next, please install the following packages, using the commands: > > sudo port -N install pkgconfig gcc12 openmpi-gcc12 fftw-3 gsl zlib openssl > subversion ld64 hdf5 +fortran +gfortran > sudo port select mpi openmpi-gcc12-fortran > sudo port select gcc mp-gcc12 > > when using HomeBrew > install HomeBrew for your version of the Mac operating system, if > you have not already installed it (https://brew.sh/). > make sure to add /opt/homebrew/bin to your PATH as instructed by > the installation script. You may need to restart your terminal. > Next, please install the following packages, using the commands: > > brew install fftw gcc gsl hdf5 hwloc jpeg open-mpi openssl zlib pkg-config > bash subversion > brew link --force jpeg openssl zlib > > --8<-- > > Also could you attach the config.log file that the error message refers > to, please? This is file configs/sim/config-data/config.log ? It will > contain the exact error message that the attempt to use gfortran as the > Fortran compiler produced. > > > Yours, > Roland > > > Hi, > > > > I hope someone can help. > > I have tried to install the Einstein Toolkit but am getting an error in > the > > final part of the process on the Jupyter CactusTutorial: > > > > %%bash > > ./simfactory/bin/sim build -j2 --thornlist thornlists/einsteintoolkit.th > > > > Output is: > > > > Using configuration: sim > > Reconfiguring sim > > Writing configuration to: /Users/rob/Cactus/configs/sim/OptionList > > Cactus - version: 4.14.0 > > Reconfiguring sim. > > Using configuration options from configure line > > Setting fds to '3,5 -j --' > > End of options from configure line > > Adding configuration options from > '/Users/rob/Cactus/configs/sim/OptionList'... > > Setting VERSION to '2018-12-13' > > Setting CPP to 'cpp' > > Setting CC to 'gcc' > > Setting CXX to 'g++' > > Setting FPP to 'cpp' > > Setting F90 to 'gfortran' > > Setting CPPFLAGS to '' > > Setting FPPFLAGS to '-traditional' > > Setting CFLAGS to '-g -std=gnu99' > > Setting CXXFLAGS to '-g -std=gnu++11' > > Setting F90FLAGS to '-g -fcray-pointer -ffixed-line-length-none' > > Setting LDFLAGS to '-rdynamic' > > Setting DEBUG to 'no' > > Setting CPP_DEBUG_FLAGS to '' > > Setting C_DEBUG_FLAGS to '' > > Setting CXX_DEBUG_FLAGS to '' > > Setting OPTIMISE to 'yes' > > Setting CPP_OPTIMISE_FLAGS to '' > > Setting C_OPTIMISE_FLAGS to '-O2' > > Setting CXX_OPTIMISE_FLAGS to '-O2' > > Setting F90_OPTIMISE_FLAGS to '-O2' > > Setting PROFILE to 'no' > > Setting CPP_PROFILE_FLAGS to '' > > Setting C_PROFILE_FLAGS to '-pg' > > Setting CXX_PROFILE_FLAGS to '-pg' > > Setting F90_PROFILE_FLAGS to '-pg' > > Setting WARN to 'yes' > > Setting CPP_WARN_FLAGS to '-Wall' > > Setting C_WARN_FLAGS to '-Wall' > > Setting CXX_WARN_FLAGS to '-Wall' > > Setting F90_WARN_FLAGS to '-Wall' > > Setting OPENMP to 'yes' > > Setting CPP_OPENMP_FLAGS to '-fopenmp' > > Setting FPP_OPENMP_FLAGS to '-D_OPENMP' > > Setting C_OPENMP_FLAGS to '-fopenmp' > > Setting CXX_OPENMP_FLAGS to '-fopenmp' > > Setting F90_OPENMP_FLAGS to '-fopenmp' > > Setting VECTORISE to 'yes' > > Setting VECTORISE_ALIGNED_ARRAYS to 'no' > > Setting VECTORISE_INLINE to 'yes' > > Setting PTHREADS_DIR to 'NO_BUILD' > > End of options from '/Users/rob/Cactus/configs/sim/OptionList'. > > creating cache ./config.cache > > checking host system type... x86_64-apple-darwin22.5.0 > > checking for mawk... no > > checking for gawk... no > > checking for nawk... no > > checking for awk... awk > > checking whether make sets ${MAKE}... yes > > checking whether the C compiler (gcc -g -std=gnu99 -rdynamic) works... > yes > > checking whether the C compiler (gcc -g -std=gnu99 -rdynamic) is a > > cross-compiler... no > > checking whether we are using GNU C... yes > > checking whether the C++ compiler (g++ -g -std=gnu++11 -rdynamic) > works... yes > > checking whether the C++ compiler (g++ -g -std=gnu++11 -rdynamic) is a > > cross-compiler... no > > checking whether we are using GNU C++... yes > > checking for nvcc... no > > checking for ranlib... ranlib > > checking for perl... perl > > checking for gtar... no > > checking for tar... tar > > checking for xargs... xargs > > checking for gzip... gzip > > checking for gpatch... no > > checking for patch... patch > > checking for git... git > > checking for ar... ar > > checking for mkdir... mkdir > > checking for bash... /bin/sh > > Unknown MacOS X f90 compiler. > > Please add appropriate information to > > /Users/rob/Cactus/lib/make/known-architectures/darwin > > and send the updated file to CactusMaint > > We will try anyway ... > > checking whether the Fortran compiler (gfortran ) works... no > > configure: error: installation or configuration problem: Fortran > > compiler cannot create executables (see > > configs/sim/config-data/config.log for details). > > > > Error reconfiguring sim-config > > make: *** [sim-config] Error 2 > > > > > > As you can see I get an error where it does not like the fortran > compiler. > > > > I have tried all of the precursor stuff a number of times using both > > MacPorts and Homebrew and this does not seem to give any errors when > > installing. > > > > > > I seem to be going round in circles to resolve this, if you are able > > to help that would be really appreciated. > > > > > > Rob > > > Yours, > Roland > > -- > My email is as private as my paper mail. I therefore support encrypting > and signing email messages. Get my PGP key from http://pgp.mit.edu . >
config.log
Description: Binary data
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