On 11/23/2011 10:10 AM, Reuti wrote: > Am 23.11.2011 um 16:01 schrieb Prentice Bisbal: > >> Schmidt, >> >> I've been having the same problem ever since I upgraded my cluster >> nodes to RHEL 6. A few weeks ago. My SGE installation was not touched >> during the upgrade, since it's on an NFS partition, and the head node >> was not touched during the upgrade, either. The error seems harmless, >> and I haven't tracked it down yet, but the existence of that error >> message, harmless or not, is a problem, as users keep reporting it when >> they see it. > Interesting. Did the version of the bash change with the upgrade? > > -- Reuti >
Sorry for the delayed response. Still behind on my mailing lists since going to SC11. Yes, the version of bash changed with the upgrade. On a 5.7 system: $ bash --version GNU bash, version 3.2.25(1)-release (x86_64-redhat-linux-gnu) Copyright (C) 2005 Free Software Foundation, Inc. $ rpm -q bash bash-3.2-32.el5 On a 6.1 system: $ bash --version GNU bash, version 4.1.2(1)-release (x86_64-unknown-linux-gnu) Copyright (C) 2009 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> $ rpm -q bash bash-4.1.2-8.el6.x86_64 -- Prentice >> --- >> Prentice >> >> >> On 11/23/2011 09:07 AM, Schmidt U. wrote: >>> Dear all, >>> I know, the problem was discusses one or two years before, but I still >>> have trouble to eliminate messages in.err file: >>> I'm using SGE 6.2u5 and for every allocated node of an openmpi job the >>> sge job's error file has two lines like this: >>> //bin/bash: module: line 1: syntax error: unexpected end of file >>> /bin/bash: error importing function definition for `module'/ >>> I defined in global bashrc: >>> /MODULEPATH=... >>> MODULESHOME=... >>> alias module='/usr/bin/modulecmd bash $*' >>> module load default_module/ >>> So far I do not need additional settings in the job script file >>> concerning module environment, as well >>> /#$ -V/ >>> is used. >>> The both lines/ /bin/bash:.../ in the err file have no effects, but >>> even new users are sometimes rattled. >>> Is anybody affected as well with this problem and found a solution to >>> eliminate these messages ? >>> >>> Udo >>> >>> >>> _______________________________________________ >>> users mailing list >>> [email protected] >>> https://gridengine.org/mailman/listinfo/users >> _______________________________________________ >> users mailing list >> [email protected] >> https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
