On 07/13/2012 03:00 AM, Reuti wrote:
Besides using the "starter_method" we discussed last week, it's also possible
to use a job prolog to change the value in the environment file:
$ cat prolog.sh
#!/bin/sh
sed -i "/^OMP_NUM_THREADS/d;\$aOMP_NUM_THREADS=$NSLOTS"
$SGE_JOB_SPOOL_DIR/environment
$ qconf -sq all.q
...
prolog sgeadmin@/usr/sge/cluster/prolog.sh
$ cat job.sh
#!/bin/sh
echo $OMP_NUM_THREADS
$ qsub -q all.q -pe openmpi 4 job.sh
Your job 4489 ("job.sh") has been submitted
$ cat job.sh.o4489
4
-- Reuti
Reuti. Your option of using a prolong.sh file works great thanks.
One question. I am getting control-characters inserted at the end in my .o
files and I am not sure where they are coming from?
If I echo "Test" in my script, I get a .o file with "Test" plus control
characters. Here is an od output example:
$ od -c OUT.o5223.1
0000000 T e s t \n 033 [ H 033 [ J
0000013
Do you know where this is coming from?
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