Hi, Am 05.09.2012 um 21:50 schrieb Tillmann Stieger:
> thx, for your quick reply. Yes we have a little cluster with 4 servers. The > problem only exists on this machine and also for all users. > The only difference is that this particular machine is the master host. The > other machines are just execution hosts and one of them is also a shadow > master. Otherwise they are pretty much identical, software wise. is this machine mounting /home in a different way than the other machines? Is the home for all users inside the private cluster or all using some fileserver available outside the cluster too? -- Reuti > till > > On 9/5/12 5:09 PM, Reuti wrote: >> Hi, >> >> Am 05.09.2012 um 15:06 schrieb Tillmann Stieger: >> >>> I have been searching for a solution to my problem for quite a while. But >>> no luck so far. I hope that someone here can help me out. >>> >>> On one specific machine I always get the following error-message: >> You mean you have a larger cluster and problem exists only on one machine, >> and there for one or all users? >> >> Is this node in some wy differently configured than the others? >> >> -- Reuti >> >> >>> Job 6941 caused action: Job 6941 set to ERROR >>> >>> User = xxx >>> Queue = all.q@xxx >>> Start Time = <unknown> >>> End Time = <unknown> >>> failed opening input/output file:09/05/2012 12:48:00 [1111:12201]: can't >>> stat() "/home/xxx" as stdout_path >>> Shepherd trace: >>> 09/05/2012 12:48:00 [1111:12200]: shepherd called with uid = 1111, euid = >>> 1111 >>> 09/05/2012 12:48:00 [1111:12200]: starting up 2011.11 >>> 09/05/2012 12:48:00 [1111:12200]: warning: starting not as superuser >>> (uid=1111) >>> 09/05/2012 12:48:00 [1111:12200]: setpgid(12200, 12200) returned 0 >>> 09/05/2012 12:48:00 [1111:12200]: do_core_binding: "binding" parameter not >>> found in config file >>> 09/05/2012 12:48:00 [1111:12200]: no prolog script to start >>> 09/05/2012 12:48:00 [1111:12200]: parent: forked "job" with pid 12201 >>> 09/05/2012 12:48:00 [1111:12200]: parent: job-pid: 12201 >>> 09/05/2012 12:48:00 [1111:12201]: child: starting son(job, >>> /opt/sge6_2/default/spool/crab2/job_scripts/6941, 0); >>> 09/05/2012 12:48:00 [1111:12201]: pid=12201 pgrp=12201 sid=12201 old >>> pgrp=12200 getlogin()=<no login set> >>> 09/05/2012 12:48:00 [1111:12201]: reading passwd information for user 'xxx' >>> 09/05/2012 12:48:00 [1111:12201]: setosjobid: uid = 1111, euid = 1111 >>> 09/05/2012 12:48:00 [1111:12201]: setting limits >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_CPU setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_FSIZE setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_DATA setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_STACK setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_CORE setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_VMEM/RLIMIT_AS setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: RLIMIT_RSS setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 09/05/2012 12:48:00 [1111:12201]: setting environment >>> 09/05/2012 12:48:00 [1111:12201]: Initializing error file >>> 09/05/2012 12:48:00 [1111:12201]: switching to intermediate/target user >>> 09/05/2012 12:48:00 [1111:12201]: tried to change uid/gid without being root >>> 09/05/2012 12:48:00 [1111:12201]: try running further with uid=1111 >>> 09/05/2012 12:48:00 [1111:12201]: closing all filedescriptors >>> 09/05/2012 12:48:00 [1111:12201]: further messages are in "error" and >>> "trace" >>> 09/05/2012 12:48:00 [1111:12201]: can't stat() "/home/xxx" as stdout_path: >>> Permission denied KRB5CCNAME=none uid=1111 gid=100 100 >>> 09/05/2012 12:48:00 [1111:12200]: wait3 returned 12201 (status: 6656; >>> WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 26) >>> 09/05/2012 12:48:00 [1111:12200]: job exited with exit status 26 >>> 09/05/2012 12:48:00 [1111:12200]: reaped "job" with pid 12201 >>> 09/05/2012 12:48:00 [1111:12200]: job exited not due to signal >>> 09/05/2012 12:48:00 [1111:12200]: job exited with status 26 >>> 09/05/2012 12:48:00 [1111:12200]: now sending signal KILL to pid -12201 >>> 09/05/2012 12:48:00 [1111:12200]: no tasker to notify >>> 09/05/2012 12:48:00 [1111:12200]: failed starting job >>> 09/05/2012 12:48:00 [1111:12200]: no epilog script to start >>> >>> Shepherd error: >>> 09/05/2012 12:48:00 [1111:12201]: can't stat() "/home/xxx" as stdout_path: >>> Permission denied KRB5CCNAME=none uid=1111 gid=100 100 >>> >>> Shepherd pe_hostfile: >>> xxx 1 all.q@xxx UNDEFINED >>> >>> >>> >>> Has someone experienced similar issues? >>> >>> I would really appreciate any advice.Thanks. >>> till >>> >>> _______________________________________________ >>> users mailing list >>> [email protected] >>> https://gridengine.org/mailman/listinfo/users >> > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
