Ok, I can try to write the script even if I really don't know how this can be done.
Thanks a lot! E. Smith, David [EESUS] ([email protected]) wrote: > > > > You could write a bash script where for each qsub you capture the jobid at submit time, and then on all qsubs after the first use the -hold_jid option to make the submitted job dependent on the completion of the previous. I'm off site, or I'd flesh this out for you. > > David > > ________________________________________ > From: [email protected] [[email protected]] on behalf of Eleonora Lusito [[email protected]] > Sent: Wednesday, September 26, 2012 1:59 PM > To: [email protected] > Subject: [gridengine users] in tandem qsub running > > Dear users, > I have a list of .sh to run, exactly 34. I can run just a .sh job at a time > so I can launch only one qsub at a time because of the complexity of the > analysis. Anyway I would like to find a way to launch a .sh script immediately > after the previous .sh script is completed. > I cannot set a time to start for each job (in order to run them consequently > ) because I don't know exactly the time the script needs due to the fact that > a variable number of users are launching a variable number of script. > I don't know really how this can be done. Any suggestion about? > > Thanks a lot > > > E. > > -- > Eleonora Lusito > Computational Biology PhD student > Molecular Medicine Program > via Ripamonti 435, 20141 Milano, Italy > > Phone number: +390294375160 > e-mail: [email protected] > > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users -- Eleonora Lusito Computational Biology PhD student Molecular Medicine Program via Ripamonti 435, 20141 Milano, Italy Phone number: +390294375160 e-mail: [email protected] _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
