Hi Jérémie! Your question is not stupid! The problem is that each run, so each qsub, is very computationally intensive. It performs many many calculations so that I cannot absolutely launch them all together.
Best, E. Jérémie Dubois-Lacoste ([email protected]) wrote: > > My answer may sounds so stupid that I'm sure I didn't properly get > you problem. :-) > Why not writing a bash script with 34 lines, one for each call to your > 34 sh things, and then submit this "meta" script to the queuing system? > > Jérémie > > 2012/9/26 Daniel Gruber : > > The easiest way would be to give a job a name with qsub -N job1 (or use -terse for getting the job id) and > > then using -hold_jid for the second job. More details you will find in the qsub man page. Of course you > > can also use DRMAA, or more unusual an array job with task throttling (-tc 1). > > > > Daniel > > > > Am 26.09.2012 um 19:59 schrieb Eleonora Lusito: > > > >> Dear users, > >> I have a list of .sh to run, exactly 34. I can run just a .sh job at a time > >> so I can launch only one qsub at a time because of the complexity of the > >> analysis. Anyway I would like to find a way to launch a .sh script immediately > >> after the previous .sh script is completed. > >> I cannot set a time to start for each job (in order to run them consequently > >> ) because I don't know exactly the time the script needs due to the fact that > >> a variable number of users are launching a variable number of script. > >> I don't know really how this can be done. Any suggestion about? > >> > >> Thanks a lot > >> > >> > >> E. > >> > >> -- > >> Eleonora Lusito > >> Computational Biology PhD student > >> Molecular Medicine Program > >> via Ripamonti 435, 20141 Milano, Italy > >> > >> Phone number: +390294375160 > >> e-mail: [email protected] > >> > >> > >> _______________________________________________ > >> users mailing list > >> [email protected] > >> https://gridengine.org/mailman/listinfo/users > > > > > > _______________________________________________ > > users mailing list > > [email protected] > > https://gridengine.org/mailman/listinfo/users > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users > -- Eleonora Lusito Computational Biology PhD student Molecular Medicine Program via Ripamonti 435, 20141 Milano, Italy Phone number: +390294375160 e-mail: [email protected] _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
