Hi, I sent a whole bunch of next gen sequencing alignment jobs on our cluster that completed just fine on the slaves but my qmaster process dies along the way and I had to restart it. Following this, I tried to submit sleeper.sh test jobs to check if everytinng was fine but they get stuck in the queue in qw state, never being submitted for execution. When I look into the qmaster log file, I see this message a number of times (I guess that each time the master tries to submit):
rule "default rule (spool dir)" in spooling context "flatfile spooling" failed writing an object Ok, I did my googling on this and found out that the problem is lack of space for spooling into the $SGE_ROOT folder. All good and fine but my df inspection shows me that my $SGE_ROOT is only at 90% free... Before I go and restart the master server, is there anything that I should be looking for? Best regards and thanks in advance Sylvain ============================================================== Sylvain Foisy, Ph. D. Chargé de projet | Project Manager Bioinformatics Labo. de génétique et médecine génomique de l'inflammation Centre de recherche Institut de cardiologie de Montréal 5000 Bélanger Est Montréal, Qc H1T 1C8 CANADA ==============================================================
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