On Tue, May 20, 2014 at 4:20 PM, Reuti <[email protected]> wrote:
> Hi,
>
> Am 20.05.2014 um 21:42 schrieb Michael Stauffer:
>
> Version OGS/GE 2011.11p1 (Rocks 6.1)
>
> I've got a situation where a user's qsub jobs are being run in
> interactive-only queues,
>
>
> an attached PE makes a queue also a BATCH queue for jobs requesting this
> PE. There is no parallel-interactive-only setting.
>
> Maybe a JSV could route a parallel batch job to dedicated queues only.
>
> -- Reuti
>
Thanks. So if I have a separate PE that's used for qlogin's only and
assigned that one only to the qlogin queues and the original PE only to the
batch queue, it should be ok? Seems easier than using JSV's (haven't tried
one yet).
-M
>
>
> as well a the expected batch-only queue. Here's his command, and below
> that are some specs of my setup. Anyone have any idea how this might happen
> or what I'm missing? I saw this happen yesterday for a job by another user,
> but otherwse qsub jobs seems to be properly going to only all.q. Thanks.
>
> -M
>
> qsub -v ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=${slots},ANTSPATH=${ANTSPATH}
> -pe unihost $slots -S /bin/bash -cwd -o ${outputTP_Dir}/${subj}_${tp}.stdout
> -e ${outputTP_Dir}/${subj}_${tp}.stderr ${ANTSPATH}antsCorticalThickness.sh
> -d 3 -a $t1 -e ${templateDir}/template.nii.gz -m ${templateDir}/masks/
> templateBrainMaskProbability.nii.gz -f ${templateDir}/masks/
> templateBrainExtractionRegistrationMask.nii.gz -p
> ${templateDir}/priors/prior%02d.nii.gz -t ${templateDir}/templateBrain.nii.gz
> -o ${outputTP_Dir}/${subj}_${tp}_
>
> [root@chead ~]# qstat -u pcook
> 35282 0.60500 antsCortic pcook r 05/20/2014 09:56:42
> [email protected] 2
> 35283 0.60500 antsCortic pcook r 05/20/2014 09:57:27
> [email protected] 2
> 35284 0.60500 antsCortic pcook r 05/20/2014 10:19:36
> [email protected] 2
> 35285 0.60500 antsCortic pcook r 05/20/2014 10:19:50
> [email protected] 2
> 35286 0.60500 antsCortic pcook r 05/20/2014 10:43:01
> [email protected] 2
> 35287 0.60500 antsCortic pcook r 05/20/2014 10:51:37
> [email protected] 2
> 35960 0.60500 antsCortic pcook r 05/20/2014 11:28:11
> [email protected] 2
> 35961 0.60500 antsCortic pcook r 05/20/2014 11:28:12
> [email protected] 2
> 35962 0.60500 antsCortic pcook r 05/20/2014 11:28:12
> [email protected] 2
> 35963 0.60500 antsCortic pcook r 05/20/2014 12:31:56
> [email protected] 2
> 35964 0.60500 antsCortic pcook r 05/20/2014 12:34:17
> [email protected] 2
> 35965 0.60500 antsCortic pcook r 05/20/2014 12:53:47
> [email protected] 2
> 35966 0.60500 antsCortic pcook r 05/20/2014 12:54:45
> [email protected] 2
> 35967 0.60500 antsCortic pcook r 05/20/2014 13:04:26
> [email protected] 2
> 35968 0.60500 antsCortic pcook r 05/20/2014 13:05:13
> [email protected] 2
> 35969 0.60500 antsCortic pcook r 05/20/2014 13:10:23
> [email protected] 2
> 35970 0.60500 antsCortic pcook r 05/20/2014 13:19:27
> [email protected] 2
> 35971 0.60500 antsCortic pcook r 05/20/2014 13:20:57
> [email protected] 2
> 35972 0.60500 antsCortic pcook r 05/20/2014 13:28:03
> [email protected] 2
> 35973 0.60500 antsCortic pcook r 05/20/2014 13:32:47
> [email protected] 2
> 35974 0.60500 antsCortic pcook r 05/20/2014 13:35:31
> [email protected] 2
> 35975 0.60500 antsCortic pcook r 05/20/2014 14:21:19
> [email protected] 2
>
> [root@chead ~]# qconf -sql
> all.q
> qlogin.long.q
> qlogin.q
>
> [root@chead ~]# qconf -sq all.q | grep -e type -e pe_list
> qtype BATCH
> pe_list make mpich mpi orte unihost serial
>
> [root@chead ~]# qconf -sq qlogin.q | grep -e type -e pe_list
> qtype INTERACTIVE
> pe_list make unihost serial
>
> [root@chead ~]# qconf -sq qlogin.long.q | grep -e type -e pe_list
> qtype INTERACTIVE
> pe_list make unihost serial
>
> [root@chead ~]# qconf -srqs
> {
> name limit_user_interactive_slots
> description Limit the users' interactive slots based
> enabled TRUE
> limit users {*} queues {qlogin.q,qlogin.long.q} to slots=6
> }
> {
> name limit_user_slots
> description Limit the users' batch slots
> enabled TRUE
> limit users {*} queues {all.q} to slots=32
> }
>
> [root@chead ~]# qconf -sp unihost
> pe_name unihost
> slots 9999
> user_lists NONE
> xuser_lists NONE
> start_proc_args /bin/true
> stop_proc_args /bin/true
> allocation_rule $pe_slots
> control_slaves FALSE
> job_is_first_task TRUE
> urgency_slots min
> accounting_summary FALSE
>
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