We are running a binary program called metaanalysis, which the user says
was working prior to a grid reconfiguration.
qsub -cwd -b y /dsg_cent/bin/metal < c22srcfile.txt > c22SBP.log
This starts, runs, creates the logs, and then fails to create the data files
qsub -cwd -b y /dsg_cent/bin/metal < c22srcfile.txt > c22SBP.log
-rw-rw-r-- 1 aldi genetics 8523209 Jun 8 09:53 c22GENOA.SBP.EA.M1.csv
-rw-rw-r-- 1 aldi genetics 8660667 Jun 8 09:53 c22FamHS.SBP.ea.M1.csv
-rw-rw-r-- 1 aldi genetics 6025412 Jun 8 09:53 c22HYPERGEN.SBP.EA.M1.csv
-rw-rw-r-- 1 aldi genetics 2061 Jun 8 09:53 c22srcfile.txt
-rw-rw-r-- 1 dhyatt genetics 43 Jun 8 13:40 c22SBP.log
-rw-r--r-- 1 dhyatt genetics 0 Jun 8 13:40 metal.e1043
-rw-r--r-- 1 dhyatt genetics 2743 Jun 8 13:40 metal.o1043
[dhyatt@blade5-2-1 c22
the control/output file indicates everything runs there are .o and .e
files, but no data
The command line works fine, and creates the data files. But I need to
run large jobs on the queue
-rw-rw-r-- 1 aldi genetics 8523209 Jun 8 09:53 c22GENOA.SBP.EA.M1.csv
-rw-rw-r-- 1 aldi genetics 8660667 Jun 8 09:53 c22FamHS.SBP.ea.M1.csv
-rw-rw-r-- 1 aldi genetics 6025412 Jun 8 09:53 c22HYPERGEN.SBP.EA.M1.csv
-rw-rw-r-- 1 aldi genetics 2061 Jun 8 09:53 c22srcfile.txt
-rw-rw-r-- 1 dhyatt genetics 8177082 Jun 8 13:39 METAANALYSIS1.TBL
-rw-rw-r-- 1 dhyatt genetics 1054 Jun 8 13:39 METAANALYSIS1.TBL.info
-rw-rw-r-- 1 dhyatt genetics 10487038 Jun 8 13:39 METAANALYSIS2.TBL
-rw-rw-r-- 1 dhyatt genetics 1316 Jun 8 13:39 METAANALYSIS2.TBL.info
-rw-rw-r-- 1 dhyatt genetics 5030 Jun 8 13:39 c22SBP.log
any thoughts?
Dan
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