Hi every one, I have some issues trying to run OMA standalone ihttp:// omabrowser.org/standalone/). I set up a grid engine network with 4 nodes. It seems to be running well using this script running qsub -t 1-57 -cwd script.sh: #$ -cwd #Merge the standard out and standard error to one file #$ -j y /bin/echo Here I am: `hostname`. Sleeping now at: `date` /bin/echo Running on host: `hostname`. /bin/echo In directory: `pwd` /bin/echo Starting on: `date` # Send mail at submission and completion of script #$ -m be #$ -M deadline@kronos time=60 if [ $# -ge 1 ]; then time=$1 fi sleep $time
echo Now it is: `date` which generate results like: Here I am: ubuntu-node9. Sleeping now at: Wed Sep 2 17:11:44 CLT 2015 Running on host: ubuntu-node9. In directory: /home/compartido2/andres/open_reading Starting on: Wed Sep 2 17:11:45 CLT 2015 Now it is: Wed Sep 2 17:12:47 CLT 2015 the same for the rest of out files. Until here the things seem to be ok. The problem is when I try to run the program OMA: qsub -t 1-57 -cwd /usr/local/OMA/bin/OMA which generate 57 files OMA.e31.* and 57 files OMA.o31.*. the OMA.e* files show: Illegal variable name: and the OMA.o* files show: Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. The process OMA without parallelization run ok. Any help would be great. cheers. -- Atte. Dimar González Soto Ingeniero Civil en Informática Universidad Austral de Chile
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