This sounds as if you have loaded "mod_md" and it has taken over the 
/.well-known/acme-challenge folder. This was a bug in that module which has 
been fixed in subsequent releases.

If you do not use mod_md, the easiest remedy is to not load it into your server.
If you want to use mod_md together with other Lets Encrypt clients such as 
certbot, you need to upgrade to a recent Apache httpd version or get the module 
from github and compile it yourself.

Hope this helps,

Stefan

> Am 02.01.2019 um 14:36 schrieb Jens-U. Mozdzen <jmozd...@nde.ag>:
> 
> Hi Jerry,
> 
> Zitat von Jerry Malcolm <techst...@malcolms.com>:
>> I have an apache install that has been up and running for months.  I use 
>> LetEncrypt for certificates.  I went to renew all of my certificates using 
>> an automated script that worked fine 3 months ago on the last refresh.  It 
>> failed on every domain saying the challenge file was not found.  I put a 
>> test.html file in /.well-known/acme-challenge folder, and tried to access it 
>> with a browser, and it gave me a 404.  After moving the test.html file 
>> around into other folders, it was found correctly in every folder except 
>> acme-challenge. [...]
> 
> what's in the Apache logs? The access log should report the 404, is there 
> anything related in the error logs?
> 
> Regards,
> J
> 
> 
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