I noticed using "PelletReasonerFactory.THE_SPEC" instead of "OntModelSpec.OWL_MEM_TRANS_INF" the example above gives the right answer. Any idea why this happens ?
Emanuel On 19 February 2013 12:45, Emanuel Santos <[email protected]> wrote: > There is a missprint there: Instead of > > dmb1.addAltEntry("bio2",mouse); should be dmb1.addAltEntry("bio2",human); > > > Thanks! > > > On 19 February 2013 12:08, Emanuel Santos <[email protected]> wrote: > >> Hi, thanks for the reply. >> >> Try using hasSubclass(Resourse, true) and hasSubclass(Resourse, false) >> and didnt get the right results. >> >> Here is the example: >> >> I'm using the mouse and human ontologies used in OAEI. >> >> >> (...) files....bio1... bio2 >> >> OntModel model1 = ModelFactory.createOntologyModel(OntModelSpec. >> OWL_MEM_TRANS_INF); >> >> OntDocumentManager dmb1 = model1.getDocumentManager(); >> >> dmb1.addAltEntry("bio1",mouse); >> >> dmb1.addAltEntry("bio2",mouse); >> >> System.out.println("Loading Ontology (1) ..."); >> >> model1.read("bio1"); >> >> model1.read("bio2"); >> >> >> OntClass cl1 = model1.getOntClass("http://mouse.owl#MA_0001251";); >> >> OntClass cl2 = model1.getOntClass("http://human.owl#NCI_C49482";); >> >> cl1.addSubClass(cl2); >> >> cl1.addSuperClass(cl2); >> >> cl2.addSubClass(cl1); >> >> cl2.addSuperClass(cl1); >> >> OntClass cl3 = model1.getOntClass("http://mouse.owl#MA_0000011";); >> >> OntClass cl4 = model1.getOntClass("http://human.owl#NCI_C12374";); >> >> cl3.addSubClass(cl4); >> >> cl3.addSuperClass(cl4); >> >> cl4.addSubClass(cl3); >> >> cl4.addSuperClass(cl3); >> >> OntClass cl5 = model1.getOntClass("http://mouse.owl#MA_0000003";); >> >> OntClass cl6 = model1.getOntClass("http://human.owl#NCI_C12919";); >> >> cl5.addSubClass(cl6); >> >> cl5.addSuperClass(cl6); >> >> cl6.addSubClass(cl5); >> >> cl6.addSuperClass(cl5); >> >> >> OntClass clss1 = model1.getOntClass("http://mouse.owl#MA_0000011";); >> >> >> OntClass clss2 = model1.getOntClass("http://human.owl#NCI_C12919";); >> >> if(clss2.hasSubClass(clss1)){ >> >> System.out.println(clss2.toString() + " has subclasse " + >> clss1.toString() ); >> >> } >> >> OntClass clss3 = model1.getOntClass("http://human.owl#NCI_C21599";); >> >> if(clss3.hasSubClass(clss1)){ >> >> System.out.println(clss3.toString() + " has subclasse " + >> clss1.toString() ); >> >> } >> >> OntClass clss4 = model1.getOntClass("http://mouse.owl#MA_0001755";); >> >> if(clss1.hasSubClass(clss4)){ >> >> System.out.println(clss1.toString() + " has subclasse " + >> clss4.toString() ); >> >> } >> >> if(clss2.hasSubClass(clss4)){ >> >> System.out.println(clss2.toString() + " has subclasse " + >> clss4.toString() ); >> >> } >> >> >> if(clss3.hasSubClass(clss4)){ >> >> System.out.println(clss3.toString() + " has subclasse " + >> clss4.toString() ); >> >> }else{ >> >> System.out.println(clss3.toString() + " doesnt have subclasse " + >> clss4.toString() ); >> >> } >> >> >> >> Result: >> >> http://human.owl#NCI_C12919 has subclasse http://mouse.owl#MA_0000011 >> >> http://human.owl#NCI_C21599 has subclasse http://mouse.owl#MA_0000011 >> >> http://mouse.owl#MA_0000011 has subclasse http://mouse.owl#MA_0001755 >> >> http://human.owl#NCI_C12919 has subclasse http://mouse.owl#MA_0001755 >> >> http://human.owl#NCI_C21599 doesnt have subclasse >> http://mouse.owl#MA_0001755 >> >> >> >> Where is the bug ? It could be a easy one.. I didn't sleep.. :) >> >> >> Thanks! >> >> >> >> >> >> On 19 February 2013 09:33, Ian Dickinson <[email protected]> wrote: >> >>> Hi Emanuel, >>> These kinds of questions are *much* easier to answer if you supply a >>> complete minimal example - working code, including the data. The short >>> answer is that the transitive reasoner should give you the answer you're >>> expecting, so there's something wrong in the way you're querying the model, >>> or something wrong in the data. >>> >>> Ian >>> >>> >>> On 19/02/13 04:31, Emanuel Santos wrote: >>> >>>> Hi again, >>>> >>>> I have a ontology model created with "OntModelSpec.OWL_MEM_TRANS_** >>>> INF". >>>> >>>> Given the original ontology I added some new "subclass" relations >>>> between some classes (using addSubClass and addSuperClass methods). >>>> >>>> Now I have a class A that is a subclass of B and C. >>>> And another class D that is subclass of A. >>>> >>>> (these results are given by hasSubClass method) >>>> >>>> >>>> Given this model I should get the result that D is a subclass of B and >>>> C. But for some reason I'm not getting that result (again using >>>> hasSubClass method) >>>> Does this mean that the model does not fully update the new inferred >>>> relations between classes ? What should I do? >>>> >>>> It is odd, because A is only a subclass (not direct one) of C after >>>> the addition of the new relations, i.e. A subclass C is inferred. >>>> >>>> Any ideas ?! >>>> >>>> Thanks! >>>> >>>> >>> >>> -- >>> ______________________________**______________________________ >>> Ian Dickinson Epimorphics Ltd, Bristol, UK >>> mailto:[email protected] http://www.epimorphics.com >>> cell: +44-7786-850536 landline: +44-1275-399069 >>> ------------------------------**------------------------------ >>> Epimorphics Ltd. is a limited company registered in England >>> (no. 7016688). Registered address: Court Lodge, 105 High St, >>> Portishead, Bristol BS20 6PT, UK >>> >>> >> >
