hi Andreas,
I may have the same problem last week, and I do some research and find
http://blog.sina.com.cn/s/blog_4d2d1c700100hury.html.
The page is Chinese, here is my translation. Moreover, I think what Dave
means is when you create ontology using protege, you have to save it as the
RDF/XML format.This is an example on read and write from OWL ontology to
MYSQL.I hope it would help.

public static IDBConnection connectDB(String DB_URL, String DB_USER,

String DB_PASSWD, String DB_NAME) {

     return new DBConnection(DB_URL, DB_USER, DB_PASSWD, DB_NAME);

}



public static OntModel createDBModelFromFile(IDBConnection con, String name,

    String filePath) {

     ModelMaker maker = ModelFactory.createModelRDBMaker(con);

     Model base = maker.createModel(name);

     OntModel newmodel = ModelFactory.createOntologyModel(

getModelSpec(maker), base);

     newmodel.read(filePath);

     return newmodel;

}



public static OntModel getModelFromDB(IDBConnection con, String name) {

     ModelMaker maker = ModelFactory.createModelRDBMaker(con);

     Model base = maker.getModel(name);

     OntModel newmodel = ModelFactory.createOntologyModel(

getModelSpec(maker), base);

     return newmodel;

}

public static OntModelSpec getModelSpec(ModelMaker maker) {

     OntModelSpec spec = new OntModelSpec(OntModelSpec.OWL_MEM);

     spec.setImportModelMaker(maker);

     return spec;

}

//Below is testing code, read from the files and then saved in the DB, and
read from DB.

public static void test() {

     String DB_URL = "jdbc:mysql://localhost/expert";

     String DB_USER = "root";

     String DB_PASSWD = "root";

     String DB = "MySQL";

     String DB_DRIVER = "com.mysql.jdbc.Driver";



     try {

         Class.forName("com.mysql.jdbc.Driver");

     } catch (ClassNotFoundException e) {

         e.printStackTrace();

     }



     String filePath = "file:C://expert//Expert.rdf-xml.owl";

     IDBConnection con = JaneUtils.connectDB(DB_URL,DB_USER, DB_PASSWD, DB);

     System.out.println(con);



     JaneUtils.createDBModelFromFile(con, "expert",filePath);

     OntModel model = JaneUtils.getModelFromDB(con, "expert");

     JaneUtils.SimpleReadOntology(model);

}



public static void SimpleReadOntology(OntModel model) {

     for (Iterator i = model.listClasses(); i.hasNext();) {

         OntClass c = (OntClass) i.next();

         System.out.println(c.getLocalName());

     }

}
source:http://blog.sina.com.cn/s/blog_4d2d1c700100hury.html


2013/4/4 Dave Reynolds <[email protected]>

> On 04/04/13 13:04, Andreas Grünwald wrote:
>
>> Thank you,
>> so as far as I understood, if I want to transform an OWL/XML ontology
>> created via the OWLAPI into Jena SDB and vice versa I have to code this by
>> myself?
>>
>
> No. I believe the OWL API, like protege, can write as well as read the
> various RDF formats including RDF/XML and Turtle.
>
> Dave
>
>
>
>  On Thu, Apr 4, 2013 at 9:18 AM, Dave Reynolds <[email protected]>
>> **wrote:
>>
>>  On 04/04/13 02:43, Andreas Grünwald wrote:
>>>
>>>  Hello,
>>>> I am new to Jena, and I am wondering, if and how it is possible to
>>>> convert
>>>> ontologies between different formats.
>>>>
>>>> At the moment, I am leveraging Protege and the OWLAPI to store concepts,
>>>> properties and individuals in serialized OWL/XML files. I would like to
>>>> reuse the concepts (T-Box, R-Box) from these files and save them within
>>>> the
>>>> new Jena triple store (Jena SDB and MYSQL). I managed to establish a
>>>> connection to the MYSQL data store via the SDB Java API. However, now I
>>>> would like to load the ontology's meta model into the database.
>>>>
>>>> Ideally, it would be also very helpful if it is possible to serialize
>>>> the
>>>> current database entries (either classes and properties, or individuals)
>>>> into OWL/XML format and vice versa.
>>>>
>>>> Is this possible with Jena? Can you give me some hints, and code
>>>> examples?
>>>> Thank you very much,
>>>> Andreas
>>>>
>>>>
>>> Jena does not support OWL/XML.  You would need to export your OWL as an
>>> RDF serialization. RDF/XML is the normative serialization for OWL though
>>> Jena handles any of the RDF formats.
>>>
>>> Dave
>>>
>>>
>>>
>>
>

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