Hopefully this is better. Here is a smaller sample of several large rdf
files I am working with:
<?xml version="1.0"?>
<rdf:RDF
xmlns:mms="http://rdf.cdisc.org/mms#";
xmlns:sdtm="http://rdf.cdisc.org/sdtm-1-2/std#";
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#";
xmlns:skos="http://www.w3.org/2004/02/skos/core#";
xmlns:sdtmigs="http://rdf.cdisc.org/sdtmig-3-1-2/schema#";
xmlns:owl="http://www.w3.org/2002/07/owl#";
xmlns:dc="http://purl.org/dc/elements/1.1/";
xmlns="http://rdf.cdisc.org/sdtmig-3-1-2/std#";
xmlns:xsd="http://www.w3.org/2001/XMLSchema#";
xmlns:sdtms="http://rdf.cdisc.org/sdtm-1-2/schema#";
xmlns:sdtmct="http://rdf.cdisc.org/sdtm/ct#";
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#";
xml:base="http://rdf.cdisc.org/sdtmig-3-1-2/std";>
<mms:DataElement rdf:ID="Column.AE.AERELNST">
<mms:dataElementType rdf:datatype="
http://www.w3.org/2001/XMLSchema#QName";
>xsd:string</mms:dataElementType>
<mms:dataElementName rdf:datatype="
http://www.w3.org/2001/XMLSchema#string";
>AERELNST</mms:dataElementName>
<sdtms:dataElementType rdf:resource="
http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.Character"/>
<sdtms:dataElementCompliance rdf:resource="
http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.PermissibleVariable"/>
<mms:ordinal rdf:datatype="
http://www.w3.org/2001/XMLSchema#positiveInteger";
>21</mms:ordinal>
<sdtmigs:references rdf:datatype="
http://www.w3.org/2001/XMLSchema#string";
>SDTM 2.2.2</sdtmigs:references>
<sdtms:dataElementRole rdf:resource="
http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.RecordQualifier"/>
<mms:dataElementLabel rdf:datatype="
http://www.w3.org/2001/XMLSchema#string";
>Relationship to Non-Study Treatment</mms:dataElementLabel>
<mms:dataElementDescription rdf:datatype="
http://www.w3.org/2001/XMLSchema#string";
>Records the investigator's opinion as to whether the event may have
been due to a treatment other than study drug. May be reported as free
text. Example: "MORE LIKELY RELATED TO ASPIRIN
USE.".</mms:dataElementDescription>
<mms:broader rdf:resource="
http://rdf.cdisc.org/sdtm-1-2/std#DE.Event.--RELNST"/>
</mms:DataElement>
I then index this data using this assembler file using jena.textindexer:
@prefix : <http://localhost/jena_example/#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix tdb: <http://jena.hpl.hp.com/2008/tdb#> .
@prefix ja: <http://jena.hpl.hp.com/2005/11/Assembler#> .
@prefix text: <http://jena.apache.org/text#> .
@prefix mms: <http://rdf.cdisc.org/mms#> .
@prefix sdtms: <http://rdf.cdisc.org/sdtm-1-2/schema#> .
@prefix sdtmigs: <http://rdf.cdisc.org/sdtmig-3-1-2/schema#> .
) .
Finally I try to run a query on the dataset with the index:
PREFIX : <http://localhost/jena_example/#> PREFIX text: <
http://jena.apache.org/text#> PREFIX mms: <http://rdf.cdisc.org/mms#>
SELECT * {?s text:query (mms:dataElementName 'AE')}
I would expect to get the first dataElement: AERELNST. I am unsure as to
whether my problem is in the format of my query or in the format of my
assembler file. Any thoughts?
On Wed, Sep 11, 2013 at 6:09 PM, Andy Seaborne <[email protected]> wrote:
> Brad,
>
> That didn't make it through (and it's truncated). Do you have a smaller
> data sample? Does the data have to be that long to show the issue? Can
> you put it up somewhere I can pull it from?
>
> Andy
>
>
> On 11/09/13 05:57, Brad Moran wrote:
>
>> Ok, this is a sample of several large rdf files I am working with:
>>
>> <?xml version="1.0"?>
>> <rdf:RDF
>> xmlns:mms="http://rdf.cdisc.**org/mms# <http://rdf.cdisc.org/mms#>"
>>
>> xmlns:sdtm="http://rdf.cdisc.**org/sdtm-1-2/std#<http://rdf.cdisc.org/sdtm-1-2/std#>
>> "
>>
>> xmlns:rdf="http://www.w3.org/**1999/02/22-rdf-syntax-ns#<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
>> "
>>
>> xmlns:skos="http://www.w3.org/**2004/02/skos/core#<http://www.w3.org/2004/02/skos/core#>
>> "
>>
>> xmlns:sdtmigs="http://rdf.**cdisc.org/sdtmig-3-1-2/schema#<http://rdf.cdisc.org/sdtmig-3-1-2/schema#>
>> **"
>>
>> xmlns:owl="http://www.w3.org/**2002/07/owl#<http://www.w3.org/2002/07/owl#>
>> "
>>
>> xmlns:dc="http://purl.org/dc/**elements/1.1/<http://purl.org/dc/elements/1.1/>
>> "
>>
>> xmlns="http://rdf.cdisc.org/**sdtmig-3-1-2/std#<http://rdf.cdisc.org/sdtmig-3-1-2/std#>
>> "
>>
>> xmlns:xsd="http://www.w3.org/**2001/XMLSchema#<http://www.w3.org/2001/XMLSchema#>
>> "
>>
>> xmlns:sdtms="http://rdf.cdisc.**org/sdtm-1-2/schema#<http://rdf.cdisc.org/sdtm-1-2/schema#>
>> "
>>
>> xmlns:sdtmct="http://rdf.**cdisc.org/sdtm/ct#<http://rdf.cdisc.org/sdtm/ct#>
>> "
>>
>> xmlns:rdfs="http://www.w3.org/**2000/01/rdf-schema#<http://www.w3.org/2000/01/rdf-schema#>
>> "
>>
>> xml:base="http://rdf.cdisc.**org/sdtmig-3-1-2/std<http://rdf.cdisc.org/sdtmig-3-1-2/std>
>> ">
>> <mms:DataElement rdf:ID="Column.AE.AERELNST">
>> <mms:dataElementType rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#QName<http://www.w3.org/2001/XMLSchema#QName>
>> "
>> >xsd:string</mms:**dataElementType>
>> <mms:dataElementName rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >AERELNST</mms:**dataElementName>
>> <sdtms:dataElementType rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.Character<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.Character>
>> "/>
>> <mms:context>
>> <mms:Dataset rdf:ID="Table.AE">
>> <sdtmigs:domainStructure rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >One record per adverse event per subject</sdtmigs:**
>> domainStructure>
>> <mms:contextName rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >AE</mms:contextName>
>> <mms:contextLabel rdf:parseType="Literal">**Adverse
>> Events</mms:contextLabel>
>> <mms:ordinal rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#positiveInteger<http://www.w3.org/2001/XMLSchema#positiveInteger>
>> "
>> >8</mms:ordinal>
>> <sdtmigs:domainCode rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >AE</sdtmigs:domainCode>
>> <mms:context rdf:resource="#**EventsObservationClass"/>
>> </mms:Dataset>
>> </mms:context>
>> <sdtms:dataElementCompliance rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**PermissibleVariable<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.PermissibleVariable>
>> "/>
>> <mms:ordinal rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#positiveInteger<http://www.w3.org/2001/XMLSchema#positiveInteger>
>> "
>> >21</mms:ordinal>
>> <sdtmigs:references rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >SDTM 2.2.2</sdtmigs:references>
>> <sdtms:dataElementRole rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**RecordQualifier<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.RecordQualifier>
>> "/>
>> <mms:dataElementLabel rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >Relationship to Non-Study Treatment</mms:**dataElementLabel>
>> <mms:dataElementDescription rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >Records the investigator's opinion as to whether the event may have
>> been due to a treatment other than study drug. May be reported as free
>> text. Example: "MORE LIKELY RELATED TO ASPIRIN
>> USE.".</mms:**dataElementDescription>
>> <mms:broader rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**std#DE.Event.--RELNST<http://rdf.cdisc.org/sdtm-1-2/std#DE.Event.--RELNST>
>> "/>
>> </mms:DataElement>
>> <mms:DataElement rdf:ID="Column.SU.SUMODIFY">
>> <mms:dataElementLabel rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >Modified Substance Name</mms:dataElementLabel>
>> <sdtms:dataElementType rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.Character<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.Character>
>> "/>
>> <mms:dataElementType rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#QName<http://www.w3.org/2001/XMLSchema#QName>
>> "
>> >xsd:string</mms:**dataElementType>
>> <sdtmigs:references rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >SDTM 2.2.1, SDTMIG 4.1.3.6</sdtmigs:references>
>> <mms:dataElementDescription rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >If SUTRT is modified, then the modified text is placed
>> here.</mms:**dataElementDescription>
>> <mms:ordinal rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#positiveInteger<http://www.w3.org/2001/XMLSchema#positiveInteger>
>> "
>> >8</mms:ordinal>
>> <sdtms:dataElementCompliance rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**PermissibleVariable<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.PermissibleVariable>
>> "/>
>> <mms:dataElementName rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >SUMODIFY</mms:**dataElementName>
>> <mms:context rdf:resource="#Table.SU"/>
>> <mms:broader rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**std#DE.Intervention.--MODIFY<http://rdf.cdisc.org/sdtm-1-2/std#DE.Intervention.--MODIFY>
>> "/**>
>> <sdtms:dataElementRole rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**SynonymQualifier<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.SynonymQualifier>
>> "/>
>> </mms:DataElement>
>> <mms:DataElement rdf:ID="Column.CO.IDVAR">
>> <sdtms:dataElementRole rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**RecordQualifier<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.RecordQualifier>
>> "/>
>> <mms:dataElementName rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >IDVAR</mms:dataElementName>
>> <sdtms:dataElementCompliance rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.**PermissibleVariable<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.PermissibleVariable>
>> "/>
>> <sdtmigs:**controlledTermsOrFormat rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >*</sdtmigs:**controlledTermsOrFormat>
>> <mms:dataElementLabel rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >Identifying Variable</mms:**dataElementLabel>
>> <mms:dataElementDescription rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >Identifying variable in the parent dataset that identifies the
>> record(s) to which the comment applies. Examples AESEQ or CMGRPID. Used
>> only when individual comments are related to domain records. Null for
>> comments collected on separate CRFs.</mms:**dataElementDescription>
>> <mms:context>
>> <mms:Dataset rdf:ID="Table.CO">
>> <sdtmigs:domainCode rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >CO</sdtmigs:domainCode>
>> <mms:contextName rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >CO</mms:contextName>
>> <sdtmigs:domainStructure rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#string<http://www.w3.org/2001/XMLSchema#string>
>> "
>> >One record per comment per subject</sdtmigs:**domainStructure>
>> <mms:contextLabel
>> rdf:parseType="Literal">**Comments</mms:contextLabel>
>> <mms:ordinal rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#positiveInteger<http://www.w3.org/2001/XMLSchema#positiveInteger>
>> "
>> >2</mms:ordinal>
>> <mms:context rdf:resource="#**SpecialPurposeDomain"/>
>> </mms:Dataset>
>> </mms:context>
>> <mms:dataElementType rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#QName<http://www.w3.org/2001/XMLSchema#QName>
>> "
>> >xsd:string</mms:**dataElementType>
>> <mms:ordinal rdf:datatype="
>> http://www.w3.org/2001/**XMLSchema#positiveInteger<http://www.w3.org/2001/XMLSchema#positiveInteger>
>> "
>> >6</mms:ordinal>
>> <sdtms:dataElementType rdf:resource="
>> http://rdf.cdisc.org/sdtm-1-2/**schema#Classifier.Character<http://rdf.cdisc.org/sdtm-1-2/schema#Classifier.Character>
>> "/>
>> </mms:DataElement>
>>
>>
>> I then index this data using this assembler file using jena.textindexer:
>>
>> @prefix :
>> <http://localhost/jena_**example/#<http://localhost/jena_example/#>>
>> .
>> @prefix rdf:
>> <http://www.w3.org/1999/02/22-**rdf-syntax-ns#<http://www.w3.org/1999/02/22-rdf-syntax-ns#>>
>> .
>> @prefix rdfs:
>> <http://www.w3.org/2000/01/**rdf-schema#<http://www.w3.org/2000/01/rdf-schema#>>
>> .
>> @prefix tdb:
>> <http://jena.hpl.hp.com/2008/**tdb#<http://jena.hpl.hp.com/2008/tdb#>>
>> .
>> @prefix ja:
>> <http://jena.hpl.hp.com/2005/**11/Assembler#<http://jena.hpl.hp.com/2005/11/Assembler#>>
>> .
>> @prefix text: <http://jena.apache.org/text#> .
>> @prefix mms: <http://rdf.cdisc.org/mms#> .
>> @prefix sdtms:
>> <http://rdf.cdisc.org/sdtm-1-**2/schema#<http://rdf.cdisc.org/sdtm-1-2/schema#>>
>> .
>> @prefix sdtmigs:
>> <http://rdf.cdisc.org/sdtmig-**3-1-2/schema#<http://rdf.cdisc.org/sdtmig-3-1-2/schema#>>
>> .
>>
>> ) .
>>
>> Finally I try to run a query on the dataset with the index:
>>
>> PREFIX : <http://localhost/jena_**example/#<http://localhost/jena_example/#>>
>> PREFIX text: <
>> http://jena.apache.org/text#> PREFIX mms: <http://rdf.cdisc.org/mms#>
>> SELECT * {?s text:query (mms:dataElementName 'AE')}
>>
>> I would expect to get the first dataElement: AERELNST. I am unsure as to
>> whether my problem is in the format of my query or in the format of my
>> assembler file. Any thoughts?
>>
>>
>> On Sun, Sep 1, 2013 at 7:43 AM, Andy Seaborne <[email protected]> wrote:
>>
>> On 01/09/13 00:02, Brad Moran wrote:
>>>
>>> sorry the file type should be saved as .owl
>>>>
>>>>
>>> I see no data. If you had an attachment, then they don't get through to
>>> the mailing list.
>>>
>>> Would it be possible to create a complete, minimal example of your setup?
>>> A small amount of data that shows the situation.
>>> This description is quite long - is it all needed or can you see the same
>>> issues in a smaller configuration?
>>>
>>> Andy
>>>
>>>
>>>
>>>> On Sat, Aug 31, 2013 at 7:00 PM, Brad Moran <[email protected]
>>>> <mailto:[email protected]>****> wrote:
>>>>
>>>> Hi,
>>>> I am currently having a problem getting the exact results I want
>>>> from my text queries. I attached one example of my rdf that I begin
>>>> with. Then I run tdbloader and successfully create an index using
>>>> this assembler file with jena.textindexer:
>>>>
>>>> @prefix :
>>>> <http://localhost/jena_****example/#<http://localhost/jena_**example/#>
>>>> <http://localhost/**jena_example/# <http://localhost/jena_example/#>>>
>>>> .
>>>> @prefix rdf:
>>>> <http://www.w3.org/1999/02/22-****rdf-syntax-ns#<http://www.w3.org/1999/02/22-**rdf-syntax-ns#>
>>>> <http://www.**w3.org/1999/02/22-rdf-syntax-**ns#<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
>>>> >>
>>>> .
>>>> @prefix rdfs:
>>>> <http://www.w3.org/2000/01/****rdf-schema#<http://www.w3.org/2000/01/**rdf-schema#>
>>>> <http://www.w3.org/**2000/01/rdf-schema#<http://www.w3.org/2000/01/rdf-schema#>
>>>> >>
>>>> .
>>>> @prefix tdb:
>>>> <http://jena.hpl.hp.com/2008/****tdb#<http://jena.hpl.hp.com/2008/**tdb#>
>>>> <http://jena.hpl.hp.com/**2008/tdb# <http://jena.hpl.hp.com/2008/tdb#>
>>>> >>
>>>> .
>>>> @prefix ja:
>>>> <http://jena.hpl.hp.com/2005/****11/Assembler#<http://jena.hpl.hp.com/2005/**11/Assembler#>
>>>> <http://jena.**hpl.hp.com/2005/11/Assembler#<http://jena.hpl.hp.com/2005/11/Assembler#>
>>>> >**>
>>>>
>>>> .
>>>> @prefix text: <http://jena.apache.org/text#> .
>>>> @prefix mms: <http://rdf.cdisc.org/mms#> .
>>>> @prefix sdtms:
>>>> <http://rdf.cdisc.org/sdtm-1-****2/schema#<http://rdf.cdisc.org/sdtm-1-**2/schema#>
>>>> <http://rdf.cdisc.**org/sdtm-1-2/schema#<http://rdf.cdisc.org/sdtm-1-2/schema#>
>>>> >>
>>>> .
>>>> @prefix sdtmigs:
>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/schema#<http://rdf.cdisc.org/sdtmig-**3-1-2/schema#>
>>>> <http://rdf.**cdisc.org/sdtmig-3-1-2/schema#<http://rdf.cdisc.org/sdtmig-3-1-2/schema#>
>>>> **>>
>>>> .
>>>> @prefix sends:
>>>> <http://rdf.cdisc.org/send/****schema#<http://rdf.cdisc.org/send/**schema#>
>>>> <http://rdf.cdisc.org/**send/schema#<http://rdf.cdisc.org/send/schema#>
>>>> >>
>>>> .
>>>> @prefix sendigs:
>>>> <http://rdf.cdisc.org/send-3.****0/schema#<http://rdf.cdisc.org/send-3.**0/schema#>
>>>> <http://rdf.cdisc.**org/send-3.0/schema#<http://rdf.cdisc.org/send-3.0/schema#>
>>>> >>
>>>> .
>>>> @prefix cts:
>>>> <http://rdf.cdisc.org/ct/****schema#<http://rdf.cdisc.org/ct/**schema#>
>>>> <http://rdf.cdisc.org/**ct/schema# <http://rdf.cdisc.org/ct/schema#>>>
>>>>
>>>> .
>>>>
>>>> ## Example of a TDB dataset and text index
>>>> ## Initialize TDB
>>>> [] ja:loadClass "com.hp.hpl.jena.tdb.TDB" .
>>>> tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset .
>>>> tdb:GraphTDB rdfs:subClassOf ja:Model .
>>>>
>>>> ## Initialize text query
>>>> [] ja:loadClass "org.apache.jena.query.text.****TextQuery" .
>>>>
>>>> # A TextDataset is a regular dataset with a text index.
>>>> text:TextDataset rdfs:subClassOf ja:RDFDataset .
>>>> # Lucene index
>>>> text:TextIndexLucene rdfs:subClassOf text:TextIndex .
>>>>
>>>> ## ------------------------------****----------------------------*
>>>> *--**
>>>>
>>>> ---
>>>> ## This URI must be fixed - it's used to assemble the text dataset.
>>>>
>>>> :text_dataset rdf:type text:TextDataset ;
>>>> text:dataset <#dataset> ;
>>>> text:index <#indexLucene> ;
>>>> .
>>>>
>>>> # A TDB dataset used for RDF storage
>>>> <#dataset> rdf:type tdb:DatasetTDB ;
>>>> tdb:location "tdb" ;
>>>> # if from command line use: "NetBeansProjects/mdr-older/**
>>>>
>>>> trunk/tdb"
>>>> .
>>>>
>>>> # Text index description
>>>> <#indexLucene> a text:TextIndexLucene ;
>>>> text:directory <file:luceneIndexes> ;
>>>> text:entityMap <#entMap> ;
>>>> .
>>>>
>>>> # Mapping in the index
>>>> # URI stored in field "uri"
>>>> # rdfs:label is mapped to field "text"
>>>> <#entMap> a text:EntityMap ;
>>>> text:entityField "uri" ;
>>>> text:defaultField "text" ;
>>>> text:map (
>>>> [ text:field "text" ; text:predicate mms:dataElementName
>>>> ]
>>>> [ text:field "text" ; text:predicate
>>>> mms:dataElementDescription ]
>>>> [ text:field "text" ; text:predicate mms:dataElementLabel ]
>>>> [ text:field "text" ; text:predicate mms:dataElementType ]
>>>> [ text:field "text" ; text:predicate mms:ordinal ]
>>>> [ text:field "text" ; text:predicate mms:broader ]
>>>> [ text:field "text" ; text:predicate mms:Dataset ]
>>>> [ text:field "text" ; text:predicate mms:contextName ]
>>>> [ text:field "text" ; text:predicate mms:contextLabel ]
>>>> [ text:field "text" ; text:predicate
>>>> mms:contextDescription
>>>> ]
>>>> [ text:field "text" ; text:predicate sdtms:dataElementType ]
>>>> [ text:field "text" ; text:predicate sdtms:dataElementRole ]
>>>> [ text:field "text" ; text:predicate sdtms:dataElementCompliance ]
>>>> [ text:field "text" ; text:predicate
>>>> sdtms:supportedBySDTMIG ]
>>>> [ text:field "text" ; text:predicate
>>>> sdtms:supportedBySEND ]
>>>> [ text:field "text" ; text:predicate sdtmigs:references ]
>>>> [ text:field "text" ; text:predicate
>>>> sdtmigs:domainStructure ]
>>>> [ text:field "text" ; text:predicate sdtmigs:domainCode ]
>>>> [ text:field "text" ; text:predicate
>>>> sdtmigs:****controlledTermsOrFormat ]
>>>>
>>>> [ text:field "text" ; text:predicate
>>>> sends:dataElementCompliance ]
>>>> [ text:field "text" ; text:predicate
>>>> sends:dataElementRole ]
>>>> [ text:field "text" ; text:predicate
>>>> sendigs:domainStructure ]
>>>> [ text:field "text" ; text:predicate sendigs:domainCode ]
>>>> [ text:field "text" ; text:predicate
>>>> sendigs:****controlledTermsOrFormat ]
>>>>
>>>> [ text:field "text" ; text:predicate cts:cdiscDefinition]
>>>> [ text:field "text" ; text:predicate
>>>> cts:nciPreferredTerm]
>>>> [ text:field "text" ; text:predicate cts:nciCode]
>>>> [ text:field "text" ; text:predicate cts:cdiscSynonyms]
>>>> [ text:field "text" ; text:predicate
>>>> cts:cdiscSubmissionValue]
>>>> [ text:field "text" ; text:predicate cts:codelistName]
>>>> [ text:field "text" ; text:predicate
>>>> cts:isExtensibleCodelist]
>>>> ) .
>>>>
>>>>
>>>> I then try to run queries against this dataset, as an example say I
>>>> want to search "AE" then I would expect every dataElement within
>>>> the
>>>> AE domain to be returned. However, I cannot get the desired result.
>>>> If I search:
>>>>
>>>> PREFIX :
>>>> <http://localhost/jena_****example/#<http://localhost/jena_**example/#>
>>>> <http://localhost/**jena_example/# <http://localhost/jena_example/#>>>
>>>>
>>>> PREFIX text:
>>>> <http://jena.apache.org/text#> PREFIX mms:
>>>> <http://rdf.cdisc.org/mms#> SELECT * {?s text:query
>>>> (mms:dataElementName 'AE')}
>>>>
>>>> I get:
>>>>
>>>>
>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.DOMAIN<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.DOMAIN>
>>>> <ht**tp://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.AE.DOMAIN<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.DOMAIN>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Table.AE<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Table.AE>
>>>> <http://**rdf.cdisc.org/sdtmig-3-1-2/**std#Table.AE<http://rdf.cdisc.org/sdtmig-3-1-2/std#Table.AE>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.FA.FACAT<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.FA.FACAT>
>>>> <htt**p://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.FA.FACAT<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.FA.FACAT>
>>>> >
>>>>
>>>>
>>>>>
>>>> when I would expect to get:
>>>>
>>>>
>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AERELNST<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AERELNST>
>>>> <**http://rdf.cdisc.org/sdtmig-3-**1-2/std#Column.AE.AERELNST<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AERELNST>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AEENDY<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AEENDY>
>>>> <ht**tp://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.AE.AEENDY<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AEENDY>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AEMODIFY<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AEMODIFY>
>>>> <**http://rdf.cdisc.org/sdtmig-3-**1-2/std#Column.AE.AEMODIFY<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AEMODIFY>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AETOXGR<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AETOXGR>
>>>> <h**ttp://rdf.cdisc.org/sdtmig-3-**1-2/std#Column.AE.AETOXGR<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AETOXGR>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AEREFID<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AEREFID>
>>>> <h**ttp://rdf.cdisc.org/sdtmig-3-**1-2/std#Column.AE.AEREFID<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AEREFID>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AESCAT<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AESCAT>
>>>> <ht**tp://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.AE.AESCAT<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AESCAT>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AESEQ<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AESEQ>
>>>> <htt**p://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.AE.AESEQ<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AESEQ>
>>>> >
>>>>
>>>>>
>>>>>
>>>>> <http://rdf.cdisc.org/sdtmig-****3-1-2/std#Column.AE.AESMIE<http://rdf.cdisc.org/sdtmig-**3-1-2/std#Column.AE.AESMIE>
>>>> <ht**tp://rdf.cdisc.org/sdtmig-3-1-**2/std#Column.AE.AESMIE<http://rdf.cdisc.org/sdtmig-3-1-2/std#Column.AE.AESMIE>
>>>> >
>>>>
>>>>
>>>>> (And the rest of the .AE dataElements just listed a few here)
>>>>
>>>> I also tried playing with this query a lot, but could not get the
>>>> desired result for example I tried the other form of query as well:
>>>>
>>>> PREFIX :
>>>> <http://localhost/jena_****example/#<http://localhost/jena_**example/#>
>>>> <http://localhost/**jena_example/# <http://localhost/jena_example/#>>>
>>>>
>>>> PREFIX text:
>>>> <http://jena.apache.org/text#> PREFIX mms:
>>>> <http://rdf.cdisc.org/mms#> SELECT * {?subject mms:contextName ?o
>>>> .
>>>> ?s text:query (mms:contextName 'SE')}
>>>>
>>>>
>>>> I am not sure whether the problem is a result of my query being
>>>> formed incorrectly, or whether the problem could be in my assembler
>>>> file that creates the index (is there a better/more complete way to
>>>> create an index for this rdf model?). Any suggestions would help,
>>>> like I mentioned in the beginning one of the rdf files from tdb is
>>>> attached. Thanks.
>>>>
>>>>
>>>>
>>>>
>>>
>>
>
