Alexandre has some things he noticed in [1]. [1] https://github.com/stain/jena-docker/issues/1#issuecomment-145130229 <https://github.com/stain/jena-docker/issues/1#issuecomment-145130229>
✌ MR > On Oct 2, 2015, at 2:59 AM, Andy Seaborne <[email protected]> wrote: > > Hi, > > The project for this is: > https://github.com/stain/jena-docker > > Looks like you have raised an issue there which is good. > > When used in Docker, what does the /fuseki area look like after fuseki has > started, before any operations? > > What are the file permissions? > > > Caused by: java.io.IOException: Invalid argument > > at sun.nio.ch.FileChannelImpl.map0(Native Method) > > at sun.nio.ch.FileChannelImpl.map(FileChannelImpl.java:925) > > (Sigh - this must be one of the most unhelpful messages possible!) > > All I can say about this is that it is some low issue with the first time TDB > attempts to set up a file. It does look like it is the first thing TDB will > do, hence asking about file permissions. The database files must be > accessible read-write. > > Andy > > On 29/09/15 20:53, Meghan Raul wrote: >> Hi, >> >> >> I am trying to run stain/jena-fuseki with a shared volume [1] and run into a >> weird issue. >> >> [1] https://hub.docker.com/r/stain/jena-fuseki/#data-persistence >> >> First, I start fresh: >> >> [[ >> mkdir /Users/meghanraul/Projects/fuseki-test/ >> ]] >> >> Then I start the container: >> >> [[ >> docker run -it -p 3030:3030 -e ADMIN_PASSWORD=12345 -v >> /Users/meghanraul/Projects/fuseki-test:/fuseki --rm stain/jena-fuseki >> ]] >> >> Then when I try to create a dataset from the web interface, I get the >> following error : >> >> [[ >> ################################### >> Initializing Apache Jena Fuseki >> >> >> ################################### >> [2015-09-28 22:55:30] Server INFO Fuseki 2.3.0 2015-07-25T17:11:28+0000 >> [2015-09-28 22:55:30] Config INFO FUSEKI_HOME=/jena-fuseki >> [2015-09-28 22:55:30] Config INFO FUSEKI_BASE=/fuseki >> [2015-09-28 22:55:30] Servlet INFO Initializing Shiro environment >> [2015-09-28 22:55:30] Config INFO Shiro file: file:///fuseki/shiro.ini >> [2015-09-28 22:55:31] Server INFO Started 2015/09/28 22:55:31 GMT on >> port 3030 >> [2015-09-28 22:55:38] Admin INFO [1] GET >> http://192.168.99.100:3030/$/server >> [2015-09-28 22:55:38] Admin INFO [1] 200 OK (15 ms) >> [2015-09-28 22:55:44] Admin INFO [2] POST >> http://192.168.99.100:3030/$/datasets >> [2015-09-28 22:55:44] Admin INFO [2] Create database : name = /foobar >> [2015-09-28 22:55:45] Admin WARN [2] RC = 500 : caught: >> BlockMgrMapped.segmentAllocate: Segment = 0 >> org.apache.jena.assembler.exceptions.AssemblerException: caught: >> BlockMgrMapped.segmentAllocate: Segment = 0 >> doing: >> root: http://base/#tdb_dataset_readwrite with type: >> http://jena.hpl.hp.com/2008/tdb#DatasetTDB assembler class: class >> org.apache.jena.tdb.assembler.DatasetAssemblerTDB >> >> at >> org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:138) >> at >> org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.open(AssemblerGroup.java:117) >> at >> org.apache.jena.assembler.assemblers.AssemblerGroup$ExpandingAssemblerGroup.open(AssemblerGroup.java:81) >> at >> org.apache.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:37) >> at >> org.apache.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:33) >> at >> org.apache.jena.fuseki.build.Builder.buildDataService(Builder.java:74) >> at >> org.apache.jena.fuseki.build.Builder.buildDataAccessPoint(Builder.java:59) >> at >> org.apache.jena.fuseki.mgt.ActionDatasets.execPostContainer(ActionDatasets.java:188) >> at >> org.apache.jena.fuseki.mgt.ActionContainerItem.execPost(ActionContainerItem.java:87) >> at >> org.apache.jena.fuseki.mgt.ActionContainerItem.perform(ActionContainerItem.java:62) >> at >> org.apache.jena.fuseki.mgt.ActionCtl.executeLifecycle(ActionCtl.java:76) >> at org.apache.jena.fuseki.mgt.ActionCtl.executeAction(ActionCtl.java:67) >> at >> org.apache.jena.fuseki.mgt.ActionCtl.execCommonWorker(ActionCtl.java:57) >> at >> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:79) >> at >> org.apache.jena.fuseki.mgt.ActionContainerItem.doPost(ActionContainerItem.java:42) >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) >> at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) >> at >> org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:717) >> at >> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1644) >> at >> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:80) >> at >> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1632) >> at >> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61) >> at >> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108) >> at >> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137) >> at >> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) >> at >> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66) >> at >> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108) >> at >> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137) >> at >> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) >> at >> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66) >> at >> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) >> at >> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) >> at >> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) >> at >> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) >> at >> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) >> at >> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) >> at >> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) >> at >> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1624) >> at >> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:550) >> at >> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) >> at >> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:568) >> at >> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:221) >> at >> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1110) >> at >> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:479) >> at >> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:183) >> at >> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1044) >> at >> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) >> at >> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) >> at org.eclipse.jetty.server.Server.handle(Server.java:459) >> at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:281) >> at >> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:232) >> at >> org.eclipse.jetty.io.AbstractConnection$1.run(AbstractConnection.java:505) >> at >> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:607) >> at >> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:536) >> at java.lang.Thread.run(Thread.java:745) >> Caused by: org.apache.jena.tdb.base.file.FileException: >> BlockMgrMapped.segmentAllocate: Segment = 0 >> at >> org.apache.jena.tdb.base.file.BlockAccessMapped.allocSegment(BlockAccessMapped.java:231) >> at >> org.apache.jena.tdb.base.file.BlockAccessMapped.getByteBuffer(BlockAccessMapped.java:157) >> at >> org.apache.jena.tdb.base.file.BlockAccessMapped.allocate(BlockAccessMapped.java:85) >> at >> org.apache.jena.tdb.base.block.BlockMgrFileAccess.allocate(BlockMgrFileAccess.java:50) >> at >> org.apache.jena.tdb.base.block.BlockMgrBase.allocate(BlockMgrBase.java:44) >> at >> org.apache.jena.tdb.base.block.BlockMgrWrapper.allocate(BlockMgrWrapper.java:46) >> at >> org.apache.jena.tdb.base.block.BlockMgrFreeChain.allocate(BlockMgrFreeChain.java:48) >> at >> org.apache.jena.tdb.base.page.PageBlockMgr.create(PageBlockMgr.java:51) >> at >> org.apache.jena.tdb.index.bplustree.BPTreeRecordsMgr.create(BPTreeRecordsMgr.java:79) >> at >> org.apache.jena.tdb.index.bplustree.BPTreeNodeMgr.createEmptyBPT(BPTreeNodeMgr.java:52) >> at >> org.apache.jena.tdb.index.bplustree.BPlusTree.createIfAbsent(BPlusTree.java:213) >> at >> org.apache.jena.tdb.index.bplustree.BPlusTree.create(BPlusTree.java:139) >> at >> org.apache.jena.tdb.index.BuilderStdIndex$RangeIndexBuilderStd.createBPTree(BuilderStdIndex.java:94) >> at >> org.apache.jena.tdb.index.BuilderStdIndex$RangeIndexBuilderStd.buildRangeIndex(BuilderStdIndex.java:65) >> at >> org.apache.jena.tdb.index.BuilderStdIndex$IndexBuilderStd.buildIndex(BuilderStdIndex.java:47) >> at >> org.apache.jena.tdb.setup.BuilderStdDB$NodeTableBuilderStd.buildNodeTable(BuilderStdDB.java:72) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd$NodeTableBuilderRecorder.buildNodeTable(DatasetBuilderStd.java:423) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd.makeNodeTable(DatasetBuilderStd.java:323) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd.buildWorker(DatasetBuilderStd.java:204) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd._build(DatasetBuilderStd.java:198) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd.build(DatasetBuilderStd.java:187) >> at >> org.apache.jena.tdb.setup.DatasetBuilderStd.create(DatasetBuilderStd.java:91) >> at org.apache.jena.tdb.StoreConnection.make(StoreConnection.java:228) >> at org.apache.jena.tdb.StoreConnection.make(StoreConnection.java:235) >> at >> org.apache.jena.tdb.transaction.DatasetGraphTransaction.<init>(DatasetGraphTransaction.java:73) >> at org.apache.jena.tdb.sys.TDBMaker._create(TDBMaker.java:58) >> at >> org.apache.jena.tdb.sys.TDBMaker.createDatasetGraphTransaction(TDBMaker.java:46) >> at >> org.apache.jena.tdb.TDBFactory._createDatasetGraph(TDBFactory.java:82) >> at org.apache.jena.tdb.TDBFactory.createDatasetGraph(TDBFactory.java:64) >> at >> org.apache.jena.tdb.assembler.DatasetAssemblerTDB.make(DatasetAssemblerTDB.java:57) >> at >> org.apache.jena.tdb.assembler.DatasetAssemblerTDB.createDataset(DatasetAssemblerTDB.java:48) >> at >> org.apache.jena.sparql.core.assembler.DatasetAssembler.open(DatasetAssembler.java:45) >> at >> org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:130) >> ... 54 more >> Caused by: java.io.IOException: Invalid argument >> at sun.nio.ch.FileChannelImpl.map0(Native Method) >> at sun.nio.ch.FileChannelImpl.map(FileChannelImpl.java:925) >> at >> org.apache.jena.tdb.base.file.BlockAccessMapped.allocSegment(BlockAccessMapped.java:223) >> ... 86 more >> [2015-09-28 22:55:45] Admin INFO [2] 500 caught: >> BlockMgrMapped.segmentAllocate: Segment = 0 (625 ms) >> ]] >> >> The same operation works ok when using fuseki outside of the container. >> >> Note: I have the same problem when using stain/jena-fuseki:devel. >> >> Anybody has an idea of what's going on? >> >> Thanks, >> Meghan >> >
