I seem to remember that the list has received a question like this before. Perhaps s-put should try to parse *.xml files as RDF/XML, and only fail if that can't be done?
--- A. Soroka The University of Virginia Library > On Mar 24, 2016, at 7:41 AM, Mikael Pesonen <[email protected]> > wrote: > > > Hi Osma! > > Well that was an easy solution that worked. Thanks! > > Mikael > > > On 24.3.2016 13:25, Osma Suominen wrote: >> Hi Mikael! >> >> Try renaming the file to .rdf instead of .xml. It's likely that s-put >> doesn't recognize the file extension .xml - after all, it could be any kind >> of XML, not just RDF/XML. >> >> -Osma >> >> On 24/03/16 11:31, Mikael Pesonen wrote: >>> >>> Hi, >>> >>> sorry for missing info. So I'm trying to: >>> >>> /apache-jena-fuseki-2.3.1$ bin/s-put http://localhost:3030/ds/data >>> http://www.lingsoft.fi/geonames/ ./tmp.xml >>> >>> >>> tmp.xml is a geonames entry: >>> >>> <?xml version="1.0" encoding="UTF-8" standalone="no"?> >>> <rdf:RDF xmlns:cc="http://creativecommons.org/ns#"; >>> xmlns:dcterms="http://purl.org/dc/terms/"; >>> xmlns:foaf="http://xmlns.com/foaf/0.1/"; >>> xmlns:gn="http://www.geonames.org/ontology#"; >>> xmlns:owl="http://www.w3.org/2002/07/owl#"; >>> xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; >>> xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; >>> xmlns:wgs84_pos="http://www.w3.org/2003/01/geo/wgs84_pos#";> >>> <gn:Feature rdf:about="http://sws.geonames.org/3/";><rdfs:isDefinedBy >>> rdf:resource="http://sws.geonames.org/3/about.rdf"/> >>> <gn:name>Zamīn Sūkhteh</gn:name><gn:alternateName xml:lang="fa">زمين >>> سوخته</gn:alternateName> >>> <gn:alternateName xml:lang="fa">Zamīn >>> Sūkhteh</gn:alternateName><gn:featureClass >>> rdf:resource="http://www.geonames.org/ontology#S"/> >>> <gn:featureCode rdf:resource="http://www.geonames.org/ontology#S.CRRL"/> >>> <gn:countryCode>IR</gn:countryCode> >>> <wgs84_pos:lat>32.45831</wgs84_pos:lat> >>> <wgs84_pos:long>48.96335</wgs84_pos:long> >>> <gn:parentFeature rdf:resource="http://sws.geonames.org/127082/"/> >>> <gn:parentCountry rdf:resource="http://sws.geonames.org/130758/"/> >>> <gn:parentADM1 rdf:resource="http://sws.geonames.org/127082/"/> >>> <gn:nearbyFeatures rdf:resource="http://sws.geonames.org/3/nearby.rdf"/> >>> <gn:locationMap >>> rdf:resource="http://www.geonames.org/3/zamin-sukhteh.html"/> >>> </gn:Feature> >>> </rdf:RDF> >>> >>> >>> And error comes from Ruby: >>> >>> /usr/lib/ruby/1.9.1/net/http.rb:1436:in `block in >>> initialize_http_header': undefined method `strip' for nil:NilClass >>> (NoMethodError) >>> from /usr/lib/ruby/1.9.1/net/http.rb:1434:in `each' >>> from /usr/lib/ruby/1.9.1/net/http.rb:1434:in >>> `initialize_http_header' >>> from bin/s-put:205:in `send_body' >>> from bin/s-put:164:in `PUT' >>> from bin/s-put:424:in `cmd_soh' >>> from bin/s-put:703:in `<main>' >>> >>> >>> XML looks like valid, but is s-put missing some info on what that XML is? >>> >>> Br, >>> Mikael >>> >>> >>> >>> >>> >>> On 18.3.2016 13:32, Andy Seaborne wrote: >>>> > No idea? I need to update data to either running database or make >>>> > a new db. >>>> >>>> (to a message 3 days ago ...) >>>> >>>> "this does not work" is a bit minimal. >>>> >>>> What does work? Other s-* commands? Other files? >>>> >>>> I'd guess that ".xml" is not recognized as RDF. It's not the right >>>> file extension. The MIME type must be for the request. There's some >>>> kind of determination in the soh script. >>>> >>>>> When trying to start another server to port 3031 server complains >>>>> >>>>> org.apache.jena.tdb.TDBException: Can't open database at location >>>>> /home/text/tools/apache-jena-fuseki-2.3.1/run/system/ >>>> >>>> You can't have two servers running on the same TDB files at the same >>>> time. (For that matter, you can't do that with MySQL either - you need >>>> a server process to mediate requests). >>>> >>>> Andy >>>> >>>>> >>>>> Mikael >>>>> >>>>> On 15.3.2016 13:40, Mikael Pesonen wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> okay thats good to know. I tried with s-put >>>>>> >>>>>> apache-jena-fuseki-2.3.1$ bin/s-put http://localhost:3030/ds/data >>>>>> http://www.lingsoft.fi/geonames/ tmp.xml >>>>>> >>>>>> /usr/lib/ruby/1.9.1/net/http.rb:1436:in `block in >>>>>> initialize_http_header': undefined method `strip' for nil:NilClass >>>>>> (NoMethodError) >>>>>> from /usr/lib/ruby/1.9.1/net/http.rb:1434:in `each' >>>>>> from /usr/lib/ruby/1.9.1/net/http.rb:1434:in >>>>>> `initialize_http_header' >>>>>> from bin/s-put:205:in `send_body' >>>>>> from bin/s-put:164:in `PUT' >>>>>> from bin/s-put:424:in `cmd_soh' >>>>>> from bin/s-put:703:in `<main>' >>>>>> >>>>>> tmp.xml contains one entry from Geonames dump: >>>>>> >>>>>> <?xml version="1.0" encoding="UTF-8" standalone="no"?><rdf:RDF >>>>>> xmlns:cc="http://creativecommons.org/ns#"; >>>>>> xmlns:dcterms="http://purl.org/dc/terms/"; >>>>>> xmlns:foaf="http://xmlns.com/foaf/0.1/"; >>>>>> xmlns:gn="http://www.geonames.org/ontology#"; >>>>>> xmlns:owl="http://www.w3.org/2002/07/owl#"; >>>>>> xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; >>>>>> xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; >>>>>> xmlns:wgs84_pos="http://www.w3.org/2003/01/geo/wgs84_pos#";><gn:Feature >>>>>> rdf:about="http://sws.geonames.org/3/";><rdfs:isDefinedBy >>>>>> rdf:resource="http://sws.geonames.org/3/about.rdf"/><gn:name>Zamīn >>>>>> Sūkhteh</gn:name><gn:alternateName xml:lang="fa">زمين >>>>>> سوخته</gn:alternateName><gn:alternateName xml:lang="fa">Zamīn >>>>>> Sūkhteh</gn:alternateName><gn:featureClass >>>>>> rdf:resource="http://www.geonames.org/ontology#S"/><gn:featureCode >>>>>> rdf:resource="http://www.geonames.org/ontology#S.CRRL"/><gn:countryCode>IR</gn:countryCode><wgs84_pos:lat>32.45831</wgs84_pos:lat><wgs84_pos:long>48.96335</wgs84_pos:long><gn:parentFeature >>>>>> >>>>>> >>>>>> rdf:resource="http://sws.geonames.org/127082/"/><gn:parentCountry >>>>>> rdf:resource="http://sws.geonames.org/130758/"/><gn:parentADM1 >>>>>> rdf:resource="http://sws.geonames.org/127082/"/><gn:nearbyFeatures >>>>>> rdf:resource="http://sws.geonames.org/3/nearby.rdf"/><gn:locationMap >>>>>> rdf:resource="http://www.geonames.org/3/zamin-sukhteh.html"/></gn:Feature></rdf:RDF> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> Br, >>>>>> Mikael >>>>>> >>>>>> >>>>>> On 15.3.2016 13:21, Andy Seaborne wrote: >>>>>>> On 15/03/16 10:40, Mikael Pesonen wrote: >>>>>>>> >>>>>>>> Hi, >>>>>>>> >>>>>>>> is it possible to add content to graph from RDF XML with command line >>>>>>>> tools? s-put requires SPARQL and tdbloader says >>>>>>>> >>>>>>>> org.apache.jena.tdb.TDBException: Can't open database at location >>>>>>>> /home/text/tools/apache-jena-3.0.1/DB/ as it is already locked by the >>>>>>>> process with PID 7672. TDB databases do not permit concurrent usage >>>>>>>> across JVMs so in order to prevent possible data corruption you >>>>>>>> cannot >>>>>>>> open this location from the JVM that does not own the lock for the >>>>>>>> dataset >>>>>>>> >>>>>>>> Br, >>>>>>>> Mikael >>>>>>>> >>>>>>> >>>>>>> >>>>>>> Yes - use s-put or s-post. >>>>>>> >>>>>>> These are the SPARQL Graph Store Protocol - no query language, no >>>>>>> update language. >>>>>>> >>>>>>> All they do is HTTP PUT or POST to the right graph name and the right >>>>>>> content type. >>>>>>> >>>>>>> You can PUT and POST to the dataset itself as well using curl or wget >>>>>>> or any HTTP tool. You need to set the Content-type header. >>>>>>> >>>>>>> Andy >>>>>>> >>>>>> >>>>> >>>> >>> >> >> > > -- > www.lingsoft.fi > > Speech Applications - Language Management - Translation - Reader's and > Writer's Tools - Text Tools - E-books and M-books > > Mikael Pesonen > System Engineer > > e-mail: [email protected] > Tel. +358 2 279 3300 > > Time zone: GMT+2 > > Helsinki Office > Eteläranta 10 > FI-00130 Helsinki > FINLAND > > Turku Office > Linnankatu 10 A > FI-20100 Turku > FINLAND >
