Hi,
I used Jena (3.0) to read a RDF/XML file and then write that RDF back out to
a ttl file. When I try to read that ttl file back into a Jena Model using
RDFDataMgr, the following error is thrown:
Exception in thread "main" org.apache.jena.riot.RiotException: [line: 9873,
col: 68] Illegal character in IRI (codepoint 0x5E, '^'):
<http://rdf.wwpdb.org/pdb/11BA/pdbx_struct_assembly_prop/1,ABSA_(A[^]...>
at
org.apache.jena.riot.system.ErrorHandlerFactory$ErrorHandlerStd.fatal(ErrorHandlerFactory.java:136)
at
org.apache.jena.riot.lang.LangEngine.raiseException(LangEngine.java:165)
at org.apache.jena.riot.lang.LangEngine.nextToken(LangEngine.java:108)
at org.apache.jena.riot.lang.LangEngine.expect(LangEngine.java:145)
at org.apache.jena.riot.lang.LangEngine.expectOrEOF(LangEngine.java:130)
at
org.apache.jena.riot.lang.LangTurtleBase.expectEndOfTriplesTurtle(LangTurtleBase.java:264)
at
org.apache.jena.riot.lang.LangTurtle.expectEndOfTriples(LangTurtle.java:51)
at
org.apache.jena.riot.lang.LangTurtleBase.triples(LangTurtleBase.java:250)
at
org.apache.jena.riot.lang.LangTurtleBase.triplesSameSubject(LangTurtleBase.java:190)
at
org.apache.jena.riot.lang.LangTurtle.oneTopLevelElement(LangTurtle.java:46)
at
org.apache.jena.riot.lang.LangTurtleBase.runParser(LangTurtleBase.java:89)
at org.apache.jena.riot.lang.LangBase.parse(LangBase.java:42)
at
org.apache.jena.riot.RDFParserRegistry$ReaderRIOTLang.read(RDFParserRegistry.java:176)
at org.apache.jena.riot.RDFDataMgr.process(RDFDataMgr.java:861)
at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:259)
at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:233)
at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:223)
at io.haylyn.atoz.TripleCount.main(TripleCount.java:31)
Lines 9873 of the ttl file plus a few more lines are listed here:
<http://rdf.wwpdb.org/pdb/11BA/pdbx_struct_assembly_prop/1,ABSA_(A^2)>
a PDBo:pdbx_struct_assembly_prop ;
PDBo:of_datablock <http://rdf.wwpdb.org/pdb/11BA> ;
PDBo:pdbx_struct_assembly_prop.biol_id
"1" ;
PDBo:pdbx_struct_assembly_prop.type
"ABSA (A^2)" ;
PDBo:pdbx_struct_assembly_prop.value
"6120" .
Shouldn't I be able to read an RDF file that Jena itself wrote? - Erich
