As far as differences in operation, it might be helpful if you could provide 
some complete examples (input data, code, outputs with differences 
highlighted). There are a lot of places your two approaches could have diverged.

SWRL and Jena rules operate in very different ways-- SWRL begins with OWL and 
brings in rules, the Jena rules functionality starts with RDF and brings in 
rules on that. It's not easy to see how it could be that you "wrote the same 
rules".

---
A. Soroka
The University of Virginia Library

> On Oct 30, 2016, at 10:35 AM, Abduladem Eljamel 
> <a_elja...@yahoo.co.uk.INVALID> wrote:
> 
> Hello,,
> I know that this mailing list is not the right place to discuss Pellet 
> reasoning problems; however, my question is about the caparison between Jena 
> reasoning and Pellet reasoning.
> I wrote SWRL rules and applied Pellet reasoner in protégé and then I wrote 
> the same rules by Jena general rules and applied Jena reasoning. I applied 
> both reasoners on the same ontology and RDF data. The inferred results are 
> completely different. Does it make sense?
> The other question is about using Pellet reasoning in Jena. I have managed to 
> include Pellet API with Jena application but I do not know how to include 
> SWRL rules? 
> 
> I would be very grateful if anyone could help me or tell me about another 
> place to ask?
> Thanks in advance
> Abdul
> 

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