Hi Rob,

Just tried re-ordering it as you suggested, and this was exactly the 
improvement that I needed. Now getting returns in 0.1 seconds rather than 200+.

Much appreciated,

Adam


________________________________
From: Rob Vesse <[email protected]>
Sent: 15 June 2018 12:12
To: [email protected]
Subject: Re: Long response times on TDB queries


On 15/06/2018, 11:46, "Adam Ladly" <[email protected]> wrote:

    22:18:21 INFO  exec                 :: Reorder/generic
    ?node <http://example.com/idmapping> ?id
    ?node ?p "http://www.ncbi.nlm.nih.gov/gene/1956";

So it looks like TDB is using a generic execution ordering and for your data 
this is clearly sub-optimal, I suspect you have far more triples matching the 
first pattern than the second.

Firstly I would try using { } to rewrite your query and explicitly force the 
execution order i.e.

PREFIX els: <http://example.com/> SELECT DISTINCT ?id FROM 
<urn:x-arq:UnionGraph> WHERE { { ?node ?p 
"http://www.ncbi.nlm.nih.gov/gene/1956"; } ?node els:idmapping ?id . }

Although the optimiser might flatten that into a single BGP anyway in which 
case you might still have the same problem.

Secondly I would try generating a stats.opt file per the documentation - 
http://jena.apache.org/documentation/tdb/optimizer.html#generating-a-statistics-file

Once you have this copy it to stats.opt in your database directory (per the 
documentation don't try and generate directly to this location) and then retry 
your original query.  You should then hopefully see Reorder/stats being used 
which if your data is structured as I suspect the statistics should reverse the 
order of your triple patterns leading to faster execution

Hope this Helps,

Rob






Reply via email to