Exception log is in the first message I sent.
On 12/03/2021 13.57, Andy Seaborne wrote:
On 12/03/2021 10:00, Mikael Pesonen wrote:
It was caused because ran out of disk space. In other cases Fuseki
/Jena have reported lack of space correctly so didn't think of that
first.
What exceptions do you get when that happnes?
It would be useful to know what happens so better messages can be
logged and better HTTP responses generated.
Andy
On 11/03/2021 15.34, Andy Seaborne wrote:
Looks similar to JENA-2055. An exception in the operation not
handled very well.
It looks like problem in the data (e.g. a syntax error at about the
count length) and the recovery throws an exception recovering (c.f.
JENA-2055). The data is not committed, the system should still be
operational. (it's a WARN, not ERROR).
It should be handled in a neater fashion - could you let us know
what the data problem is and it can be handled better.
Andy
On 11/03/2021 12:41, Mikael Pesonen wrote:
I'm posting into Fuseki (3.17) a 75Mb turtle file with command line
curl and get this error. What might be the cause and how to fix this?
14:31:40 INFO Fuseki :: [1] Body:
Content-Length=78221624, Content-Type=text/turtle, Charset=null =>
Turtle : Count=1099567 Triples=1099567 Quads=0
14:31:45 WARN HttpAction :: Transaction still active - no
commit or abort seen (forced abort)
14:31:45 WARN HttpAction :: Exception in forced abort (trying
to continue)
org.apache.jena.tdb.transaction.TDBTransactionException:
Transaction has already committed or aborted
at
org.apache.jena.tdb.transaction.Transaction.abort(Transaction.java:305)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.tdb.transaction.DatasetGraphTxn.abort(DatasetGraphTxn.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.tdb.transaction.DatasetGraphTransaction.abort(DatasetGraphTransaction.java:208)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.sparql.core.DatasetGraphWrapper.abort(DatasetGraphWrapper.java:275)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.query.text.DatasetGraphText.lambda$new$1(DatasetGraphText.java:59)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.query.text.DatasetGraphText.abort(DatasetGraphText.java:192)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.HttpAction.end(HttpAction.java:300)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.addDataIntoTxn(GSP_RW.java:184)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.doPutPostGSP(GSP_RW.java:129)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.execPostGSP(GSP_RW.java:78)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.doPost(GSP_RW.java:75)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.doPost$(ActionREST.java:102)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.execute(ActionREST.java:51)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionService.executeLifecycle(ActionService.java:58)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.execAny(ActionREST.java:165)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionProcessor.execPost(ActionProcessor.java:48)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionProcessor.process(ActionProcessor.java:34)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionBase.process(ActionBase.java:55)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionExecLib.execAction(ActionExecLib.java:106)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.dispatchAction(Dispatcher.java:118)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.process(Dispatcher.java:110)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.dispatch(Dispatcher.java:96)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:51)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:450)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:387)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:284)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:247)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:201)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:548)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:602)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1612)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1434)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:501)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1582)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1349)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.gzip.GzipHandler.handle(GzipHandler.java:716)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
at org.eclipse.jetty.server.Server.handle(Server.java:516)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:556)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:273)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:105)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.ChannelEndPoint$1.run(ChannelEndPoint.java:104)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:773)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:905)
[fuseki-server.jar:3.17.0]
at java.lang.Thread.run(Thread.java:832) [?:?]
14:31:45 WARN Fuseki :: [1] RC = 500 : Transaction has
already committed or aborted
org.apache.jena.tdb.transaction.TDBTransactionException:
Transaction has already committed or aborted
at
org.apache.jena.tdb.transaction.Transaction.abort(Transaction.java:305)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.tdb.transaction.DatasetGraphTxn.abort(DatasetGraphTxn.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.tdb.transaction.DatasetGraphTransaction.abort(DatasetGraphTransaction.java:208)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.sparql.core.DatasetGraphWrapper.abort(DatasetGraphWrapper.java:275)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.query.text.DatasetGraphText.lambda$new$1(DatasetGraphText.java:59)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.query.text.DatasetGraphText.end(DatasetGraphText.java:284)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.HttpAction.end(HttpAction.java:306)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.addDataIntoTxn(GSP_RW.java:184)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.doPutPostGSP(GSP_RW.java:129)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.execPostGSP(GSP_RW.java:78)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.GSP_RW.doPost(GSP_RW.java:75)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.doPost$(ActionREST.java:102)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.execute(ActionREST.java:51)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionService.executeLifecycle(ActionService.java:58)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionREST.execAny(ActionREST.java:165)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionProcessor.execPost(ActionProcessor.java:48)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionProcessor.process(ActionProcessor.java:34)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionBase.process(ActionBase.java:55)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.ActionExecLib.execAction(ActionExecLib.java:106)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.dispatchAction(Dispatcher.java:118)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.process(Dispatcher.java:110)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.server.Dispatcher.dispatch(Dispatcher.java:96)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:51)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:450)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:387)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
~[fuseki-server.jar:3.17.0]
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:284)
~[fuseki-server.jar:3.17.0]
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:247)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:201)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:548)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:602)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1612)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1434)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:501)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1582)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1349)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.gzip.GzipHandler.handle(GzipHandler.java:716)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
at org.eclipse.jetty.server.Server.handle(Server.java:516)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
~[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:556)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:273)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:105)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.io.ChannelEndPoint$1.run(ChannelEndPoint.java:104)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:773)
[fuseki-server.jar:3.17.0]
at
org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:905)
[fuseki-server.jar:3.17.0]
at java.lang.Thread.run(Thread.java:832) [?:?]
14:31:45 INFO Fuseki :: [1] 500 Server Error (30.937 s)
--
Lingsoft - 30 years of Leading Language Management
www.lingsoft.fi
Speech Applications - Language Management - Translation - Reader's and Writer's
Tools - Text Tools - E-books and M-books
Mikael Pesonen
System Engineer
e-mail: mikael.peso...@lingsoft.fi
Tel. +358 2 279 3300
Time zone: GMT+2
Helsinki Office
Eteläranta 10
FI-00130 Helsinki
FINLAND
Turku Office
Kauppiaskatu 5 A
FI-20100 Turku
FINLAND