On 23 November 2017 at 05:52, Lex Trotman <[email protected]> wrote: > Hi Stephen, > > This is the Geany mailing list not the Numpy or Matplotlib or Python > ML. Geany is just the editor/IDE, your problem is, as Matthew said, > in your program, not in Geany. This is not the correct forum to ask > questions about your program or the libraries it uses. You need to > ask the question at the appropriate forum, at a guess Matplotlib might > be the culprit.
To make a non-programming analogy that hopefully will be clear, Geany is just a tool for putting together a program, just as spanners are a tool for putting together a car, but you don't ask the spanner manufacturer why your car does not work. Cheers Lex > > Cheers > Lex > > On 23 November 2017 at 01:53, Stephen P. Molnar <[email protected]> > wrote: >> >> On 11/22/2017 10:13 AM, Matthew Brush wrote: >>> >>> On 2017-11-22 06:29 AM, Stephen P. Molnar wrote: >>>> >>>> I am running Geny v-1.31 from Debian Stretch on my Linux platform. >>>> >>>> FOr unknown reasons I have started getting error messages from a Python >>>> 3..5 script I wrote to plot multiple curves frlom data generated by a >>>> FORTRAN09 program. >>>> >>>> Enter Molecule ID: A >>>> Traceback (most recent call last): >>>> File "MolT_5IMT_w_3_2_plot.py", line 83, in <module> >>>> fig.savefig(name_plt,bbox_inches='tight') >>>> File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", >>>> line 1814, in savefig >>>> self.canvas.print_figure(fname, **kwargs) >>>> File >>>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backend_bases.py", line >>>> 2180, in print_figure >>>> self.figure.dpi = dpi >>>> File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", >>>> line 436, in _set_dpi >>>> self.set_size_inches(w, h, forward=forward) >>>> File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", >>>> line 745, in set_size_inches >>>> manager.resize(int(canvasw), int(canvash)) >>>> File >>>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_tkagg.py", >>>> line 540, in resize >>>> self.canvas._tkcanvas.master.geometry("%dx%d" % (width, height)) >>>> File "/usr/lib/python3.5/tkinter/__init__.py", line 1698, in >>>> wm_geometry >>>> return self.tk.call('wm', 'geometry', self._w, newGeometry) >>>> _tkinter.TclError: can't invoke "wm" command: application has been >>>> destroyed >>>> >>>> >>>> ------------------ >>>> (program exited with code: 1) >>>> Press return to continue >>>> >>>> Unfortunately, I am an Organic Chemist and not really a Python programmer >>>> and wpuld really appreciate some help in solving this problem. >>>> >>> >>> It's not a Geany related problem, it's something with your code, but it's >>> hard to say what since you didn't attach/pastebin the code. I expect based >>> on the error message that you are calling the 'wm' command after (or before) >>> the tk main window has been created. >>> >>> Regards, >>> Matthew Brush >>> _______________________________________________ >>> Users mailing list >>> [email protected] >>> https://lists.geany.org/cgi-bin/mailman/listinfo/users >> >> Here's the code: >> >> #!/usr/bin/env python3 >> # -*- coding: utf-8 -*- >> """ >> Multiple_Plots_3.py >> >> Copyright (c) 2017 Stephen P. Molnar, Ph.D. All rights reserved. >> >> """ >> import numpy as np >> from mpl_toolkits.axes_grid1 import host_subplot >> import mpl_toolkits.axisartist as AA >> import matplotlib.pyplot as plt >> >> data = [] >> name = input("Enter Molecule ID: ") >> >> name_in = name+'_P' >> data = np.genfromtxt(name_in) >> >> s = data[:,0] >> FTm = data[:,1] #atomic number >> FTe = data[:,2] #atomic mass >> FTc = data[:,3] #atom electron density >> >> >> fig = plt.figure(figsize=(7.6,4)) >> >> host = host_subplot(111, axes_class=AA.Axes) >> plt.subplots_adjust(right=0.75) >> >> par1 = host.twinx() >> par2 = host.twinx() >> >> offset = 60 >> new_fixed_axis = par2.get_grid_helper().new_fixed_axis >> par2.axis["right"] = new_fixed_axis(loc="right", axes=par2,offset=(offset, >> 0)) >> >> par2.axis["right"].toggle(all=True) >> >> host.set_xlim(0, 30) >> >> host.set_ylim(min(FTm), max(FTm)) >> >> >> >> host.set_xlabel("Distance ($\AA$)") >> host.set_ylabel("Atomic Number") >> par1.set_ylabel("Atom Mass") >> par2.set_ylabel("Atom Electron Density") >> >> p1, = host.plot(data[:,0], data[:,1])#, label="Atomic Number") >> p2, = par1.plot(data[:,0], data[:,2])#, label="Atom Mass") >> p3, = par2.plot(data[:,0], data[:,3])#, label="Atom Electron Density") >> >> >> par1.set_ylim(min(FTe), max(FTe)) >> par2.set_ylim(min(FTc),max(FTc)) >> >> >> #host.legend() >> >> host.axis["left"].label.set_color(p1.get_color()) >> par1.axis["right"].label.set_color(p2.get_color()) >> par2.axis["right"].label.set_color(p3.get_color()) >> >> host.title.set_text('Molecule: {0} - Molecular Transforms'.format(name)) >> plt.draw() >> plt.show() >> >> #name_plt = name+'-fig1.png' >> name_plt = name >> >> fig.savefig(name_plt,bbox_inches='tight') >> >> >> Also attached with a copy of the input file. (I don't know if it will be >> stripped out or not) >> >> >> -- >> Stephen P. Molnar, Ph.D. Life is a fuzzy set >> www.molecular-modeling.net Stochastic and multivariate >> (614)312-7528 (c) >> Skype: smolnar1 >> >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.geany.org/cgi-bin/mailman/listinfo/users >> _______________________________________________ Users mailing list [email protected] https://lists.geany.org/cgi-bin/mailman/listinfo/users
