Good afternoon,
I really hate to post asking for help with a problem, but
my own efforts have not worked out well (probably operator
error).
Anyway, I'm trying to run a code that was built with PGI 6.1
and OpenMPI-1.1.1. The mpirun command looks like:
mpirun --hostfile machines.${PBS_JOBID} --np ${NP} -mca btl self,sm,tcp
./${EXE} ${CASEPROJ} >> OUTPUT
I get the following error in the PBS error file:
[o1:22559] mca_oob_tcp_accept: accept() failed with errno 9.
...
and keeps repeating (for a long time).
ompi_info gives the following output:
> ompi_info
Open MPI: 1.1.1
Open MPI SVN revision: r11473
Open RTE: 1.1.1
Open RTE SVN revision: r11473
OPAL: 1.1.1
OPAL SVN revision: r11473
Prefix: /usr/x86_64-pgi-6.1/openmpi-1.1.1
Configured architecture: x86_64-suse-linux-gnu
Configured by: root
Configured on: Mon Oct 16 20:51:34 MDT 2006
Configure host: lo248
Built by: root
Built on: Mon Oct 16 21:02:00 MDT 2006
Built host: lo248
C bindings: yes
C++ bindings: yes
Fortran77 bindings: yes (all)
Fortran90 bindings: yes
Fortran90 bindings size: small
C compiler: pgcc
C compiler absolute: /opt/pgi/linux86-64/6.1/bin/pgcc
C++ compiler: pgCC
C++ compiler absolute: /opt/pgi/linux86-64/6.1/bin/pgCC
Fortran77 compiler: pgf77
Fortran77 compiler abs: /opt/pgi/linux86-64/6.1/bin/pgf77
Fortran90 compiler: pgf90
Fortran90 compiler abs: /opt/pgi/linux86-64/6.1/bin/pgf90
C profiling: yes
C++ profiling: yes
Fortran77 profiling: yes
Fortran90 profiling: yes
C++ exceptions: yes
Thread support: posix (mpi: no, progress: no)
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
MCA memory: ptmalloc2 (MCA v1.0, API v1.0, Component v1.1.1)
MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.1.1)
MCA maffinity: first_use (MCA v1.0, API v1.0, Component v1.1.1)
MCA maffinity: libnuma (MCA v1.0, API v1.0, Component v1.1.1)
MCA timer: linux (MCA v1.0, API v1.0, Component v1.1.1)
MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
MCA coll: basic (MCA v1.0, API v1.0, Component v1.1.1)
MCA coll: hierarch (MCA v1.0, API v1.0, Component v1.1.1)
MCA coll: self (MCA v1.0, API v1.0, Component v1.1.1)
MCA coll: sm (MCA v1.0, API v1.0, Component v1.1.1)
MCA coll: tuned (MCA v1.0, API v1.0, Component v1.1.1)
MCA io: romio (MCA v1.0, API v1.0, Component v1.1.1)
MCA mpool: gm (MCA v1.0, API v1.0, Component v1.1.1)
MCA mpool: sm (MCA v1.0, API v1.0, Component v1.1.1)
MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.1.1)
MCA bml: r2 (MCA v1.0, API v1.0, Component v1.1.1)
MCA rcache: rb (MCA v1.0, API v1.0, Component v1.1.1)
MCA btl: gm (MCA v1.0, API v1.0, Component v1.1.1)
MCA btl: self (MCA v1.0, API v1.0, Component v1.1.1)
MCA btl: sm (MCA v1.0, API v1.0, Component v1.1.1)
MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA topo: unity (MCA v1.0, API v1.0, Component v1.1.1)
MCA osc: pt2pt (MCA v1.0, API v1.0, Component v1.0)
MCA gpr: null (MCA v1.0, API v1.0, Component v1.1.1)
MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.1.1)
MCA gpr: replica (MCA v1.0, API v1.0, Component v1.1.1)
MCA iof: proxy (MCA v1.0, API v1.0, Component v1.1.1)
MCA iof: svc (MCA v1.0, API v1.0, Component v1.1.1)
MCA ns: proxy (MCA v1.0, API v1.0, Component v1.1.1)
MCA ns: replica (MCA v1.0, API v1.0, Component v1.1.1)
MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.1.1)
MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.1.1)
MCA ras: localhost (MCA v1.0, API v1.0, Component v1.1.1)
MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.1.1)
MCA rds: resfile (MCA v1.0, API v1.0, Component v1.1.1)
MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.1.1)
MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.1.1)
MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.1.1)
MCA rml: oob (MCA v1.0, API v1.0, Component v1.1.1)
MCA pls: fork (MCA v1.0, API v1.0, Component v1.1.1)
MCA pls: rsh (MCA v1.0, API v1.0, Component v1.1.1)
MCA sds: env (MCA v1.0, API v1.0, Component v1.1.1)
MCA sds: pipe (MCA v1.0, API v1.0, Component v1.1.1)
MCA sds: seed (MCA v1.0, API v1.0, Component v1.1.1)
MCA sds: singleton (MCA v1.0, API v1.0, Component v1.1.1)
I found this link via google:
http://www.open-mpi.org/community/lists/users/2006/06/1486.php
But to be honest I'm not sure how to apply this to fix my problem.
Thanks!
Jeff
