Hi Jeff,
I have sent the tar'ed and gzipped make.log and config.log file along
with my original email. For your benefit, I will send you the files
directly to your email so that we dont duplicate the files on the
archive server.
Cheers,
Sampath.
From: Jeff Squyres <jsquy...@cisco.com>
Subject: Re: [OMPI users] Problems compiling OPENMPI !!
To: Open MPI Users <us...@open-mpi.org>
Message-ID: <ec22d215-de82-4994-945d-bf3e4bfb3...@cisco.com>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
Please send all the information listed here:
http://www.open-mpi.org/community/help/
-----Original Message-----
From: kopp...@aim.com
To: us...@open-mpi.org
Sent: Tue, 22 Apr 2008 2:18 pm
Subject: Re: Problems compiling OPENMPI !!
Hi Jeff,
Yes. my C++ compiler works quite well. I have compiled and run a number
of programs with it. Further more, I could comfortably install mpich2
with this compiler with no problems.
What is surprising is : during configure ... I get:
.....
=========================================================================
===
== Modular Component Architecture (MCA) setup
=========================================================================
===
checking for subdir args...
'--prefix=/usr/people/camm/kopposa1/openmpi' 'FC=ifort64' 'F77=ifort64'
'F95=ifort64' 'CC=icc64'
'CXX=icpc'
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... yes
checking whether gcc accepts -g... yes
.......
Intel C compiler is not a gnu objective C compiler. I don't know why
openmpi thinks that this is a GNU Compiler.
Thanks for your time,
Cheers,
Sampath.
From: Jeff Squyres (jsquyres_at_[hidden])
List-Post: users@lists.open-mpi.org
Date: 2008-04-22 08:05:16
Is your C++ compiler installer properly? Can you build and run other C
++ programs that use the STL?
-----Original Message-----
From: kopp...@aim.com
To: us...@open-mpi.org
Sent: Tue, 22 Apr 2008 11:01 am
Subject: Problems compiling OPENMPI !!
Hello there,
I downloaded openmpi-1.2.5.tar and "un-tar"'ed it with tar -xvf
openmpi-1.2.5.tar which created a directory openmpi-1.2.5.
I then created a build directory and called
../openmpi-1.2.5/configure --prefix=$home/openmpi FC=ifort64
F77=ifort64 F95=ifort64 CC=icc64 CXX=icpc | & tee config.out
Everything went fine.
I then said : make -j 8 | & tee make.out and the compilation crashed
with:
/bin/sh ../../../libtool --tag=CXX --mode=link icpc -O3 -DNDEBUG
-finline-functions -pthread -export-dynamic -o libmpi_cxx.la -rpath
/usr/people/camm/kopposa1/openmpi/lib mpicxx.lo intercepts.lo comm.lo
datatype.lo file.lo win.lo -lnsl -lutil
libtool: link: icpc -shared .libs/mpicxx.o .libs/intercepts.o
.libs/comm.o .libs/datatype.o .libs/file.o .libs/win.o -lnsl -lutil
-L/usr/prog/intel/cce/101015/lib
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -limf -lsvml
-lipgo /usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a
-L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src
-L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs
-L/scratch/gcc/./gcc -L/lib/../lib64 -L/usr/lib/../lib64 -lm -lgcc
-lintlc -lpthread -lgcc_s -lirc_s -ldl -lc -pthread -pthread
-Wl,-soname -Wl,libmpi_cxx.so.0 -o .libs/libmpi_cxx.so.0.0.0
ld:
/usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a(ios_init.o):
relocation R_X86_64_32 against `pthread_cancel' can not be used when
making a shared object; recompile with -fPIC
/usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a: could not
read symbols: Bad value
make[3]: *** [libmpi_cxx.la] Error 1
make[3]: Leaving directory `/scratch/openmpi/ompi/mpi/cxx'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/scratch/openmpi/ompi/mpi'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/scratch/openmpi/ompi'
make: *** [all-recursive] Error 1
FYI: I am attaching the zipped make.out and config.out files.
Thanks a lot for your help,
Cheers,
Sampath.
Sampath Koppole,
The Computational Molecular Biophysics Group,
Interdisciplinary Center for Scientific Computing (IWR),
368, Im Neuenheimer Feld,
Heidelberg. D-69120.
Germany.
Web Home : http://www.sampath.koppole.com
