Hi Well, let's try, I downloaded binaries for the sge,
I was thinking on rsh, I'm going to try it after the old ssh/sshd settings and before than trying to compile the sge... which I guess is not an easy task. Regards -- Jaime Perea El Jueves, 2 de Octubre de 2008, Reuti escribió: > Am 02.10.2008 um 16:51 schrieb Jaime Perea: > > Hi > > > > builtin, do I have to change them to ssh and sshd as in sge 6.1? > > I always used only rsh, as ssh doesn't provide a Tight Integration > with correct accounting (unless you compiled SGE with -tigth-ssh on > your own). > > But it would be worth a try with either the rsh or ssh stuff, as the > builtin starter is a new feature of SGE 6.2. > > -- Reuti > > > Thanks again > > > > -- > > Jaime Perea > > > > El Jueves, 2 de Octubre de 2008, Reuti escribió: > >> Am 02.10.2008 um 16:12 schrieb Jaime Perea: > >>> Hi again, thanks for the answer > >>> > >>> Actually I took the definition of the pe from the openmpi > >>> webpage, in my case > >>> > >>> qconf -sp orte > >>> pe_name orte > >>> slots 24 > >>> user_lists NONE > >>> xuser_lists NONE > >>> start_proc_args /bin/true > >>> stop_proc_args /bin/true > >>> allocation_rule $round_robin > >>> control_slaves TRUE > >>> job_is_first_task TRUE > >>> urgency_slots min > >>> accounting_summary FALSE > >>> > >>> Our sge is version 6.2 and openmpi was configured with > >>> the --with-sge switch of course. > >> > >> In SGE 6.2 two types of remote startup are implemented. Which one are > >> you using (builtin or the former settings for each command) in the > >> SGE configuration? > >> > >> -- Reuti > >> > >>> Regards > >>> > >>> -- > >>> Jaime Perea > >>> > >>> El Jueves, 2 de Octubre de 2008, Reuti escribió: > >>>> Hi, > >>>> > >>>> Am 02.10.2008 um 15:37 schrieb Jaime Perea: > >>>>> Hello, > >>>>> > >>>>> I am having some problems with a combination of openmpi+sge6.2 > >>>>> > >>>>> Currently I'm working with the 1.3a1r19666 openmpi release and the > >>>> > >>>> AFAIK, you have to enable SGE support in Open MPI 1.3 during its > >>>> compilation. > >>>> > >>>>> myrinet gm libraries (2.1.19) but the problem was the same > >>>>> with the > >>>>> prior 1.3 version. In short, I'm able to send jobs to a que via > >>>>> qrsh, > >>>>> more or less this way, > >>>>> > >>>>> qrsh -cwd -V -q para -pe orte 6 mpirun -np 6 ctiming > >>>> > >>>> It should also work without specifying the number of slots a second > >>>> time, i.e.: > >>>> > >>>> qrsh -cwd -V -q para -pe orte 6 mpirun ctiming > >>>> > >>>>> ctiming is a small test program and in this way it works, but if I > >>>>> try to > >>>>> send the same task by using qsub on a script like this one > >>>>> > >>>>> #!/bin/sh > >>>>> #$ -pe orte 6 > >>>> > >>>> This PE has just /bin/true for start-/stop_proc_args? > >>>> > >>>>> #$ -q para > >>>>> #$ -cwd > >>>>> # > >>>>> mpirun -np $NSLOTS /model/jaime/ctiming > >>>> > >>>> mpirun /model/jaime/ctiming > >>>> > >>>>> It fails with a message like this, > >>>>> .............. > >>>>> > >>>>> error reading job context from "qlogin_starter" > >>>> > >>>> qlogin_starter should of course only be started with a qlogin > >>>> command > >>>> in SGE. > >>>> > >>>>> ------------------------------------------------------------------ > >>>>> -- > >>>>> -- > >>>>> ---- > >>>>> A daemon (pid 11207) died unexpectedly with status 1 while > >>>>> attempting > >>>>> to launch so we are aborting. > >>>>> > >>>>> There may be more information reported by the environment (see > >>>>> above). > >>>>> > >>>>> This may be because the daemon was unable to find all the needed > >>>>> shared > >>>>> libraries on the remote node. You may set your LD_LIBRARY_PATH to > >>>>> have the > >>>>> location of the shared libraries on the remote nodes and this will > >>>>> automatically be forwarded to the remote nodes. > >>>>> > >>>>> ............. > >>>>> > >>>>> I know that LD_LIBRARY_PATH is not the problem, since I checked > >>>>> that all > >>>>> the environment is present.... any idea? > >>>>> > >>>>> For previous releases of the sge and openmpi I was able to do them > >>>>> work > >>>>> together with a few wrappers, > >>>> > >>>> Which version of SGE are you using? > >>>> > >>>> -- Reuti > >>>> > >>>>> but now the integration looks much better! > >>>>> This happen only when sending openmpi jobs. > >>>>> > >>>>> Thanks and all the best > >>>>> > >>>>> --- > >>>>> > >>>>> Jaime D. Perea Duarte. <jaime at iaa dot es> > >>>>> Linux registered user #10472 > >>>>> > >>>>> Dep. Astrofisica Extragalactica. > >>>>> Instituto de Astrofisica de Andalucia (CSIC) > >>>>> Apdo. 3004, 18080 Granada, Spain. > >>>>> _______________________________________________ > >>>>> users mailing list > >>>>> us...@open-mpi.org > >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>> > >>>> _______________________________________________ > >>>> users mailing list > >>>> us...@open-mpi.org > >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
