I'm running OpenMPI on OS X 4.11. After upgrading to OpenMPI-1.3 I
get the following error when submitting a job via XGrid:
dyld: lazy symbol binding failed: Symbol not found:
_orte_pointer_array_add
Referenced from: /usr/local/mpi/lib/openmpi/mca_plm_xgrid.so
Expected in: flat namespace
Here you'll find ompi_info's output:
[g5-node-1:~] motte% ompi_info
Package: Open MPI root@ibi.local Distribution
Open MPI: 1.3
Open MPI SVN revision: r20295
Open MPI release date: Jan 19, 2009
Open RTE: 1.3
Open RTE SVN revision: r20295
Open RTE release date: Jan 19, 2009
OPAL: 1.3
OPAL SVN revision: r20295
OPAL release date: Jan 19, 2009
Ident string: 1.3
Prefix: /usr/local/mpi
Configured architecture: powerpc-apple-darwin8
Configure host: ibi.local
Configured by: root
Configured on: Tue Jan 20 19:45:26 CET 2009
Configure host: ibi.local
Built by: root
Built on: Tue Jan 20 20:49:48 CET 2009
Built host: ibi.local
C bindings: yes
C++ bindings: yes
Fortran77 bindings: yes (single underscore)
Fortran90 bindings: yes
Fortran90 bindings size: small
C compiler: gcc-4.3
C compiler absolute: /usr/local/bin/gcc-4.3
C++ compiler: c++-4.3
C++ compiler absolute: /usr/local/bin/c++-4.3
Fortran77 compiler: gfortran-4.3
Fortran77 compiler abs: /usr/local/bin/gfortran-4.3
Fortran90 compiler: gfortran-4.3
Fortran90 compiler abs: /usr/local/bin/gfortran-4.3
C profiling: yes
C++ profiling: yes
Fortran77 profiling: yes
Fortran90 profiling: yes
C++ exceptions: no
Thread support: posix (mpi: no, progress: no)
Sparse Groups: no
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: yes
Heterogeneous support: no
mpirun default --prefix: no
MPI I/O support: yes
MPI_WTIME support: gettimeofday
Symbol visibility support: yes
FT Checkpoint support: no (checkpoint thread: no)
MCA backtrace: darwin (MCA v2.0, API v2.0, Component v1.3)
MCA paffinity: darwin (MCA v2.0, API v2.0, Component v1.3)
MCA carto: auto_detect (MCA v2.0, API v2.0, Component
v1.3)
MCA carto: file (MCA v2.0, API v2.0, Component v1.3)
MCA maffinity: first_use (MCA v2.0, API v2.0, Component
v1.3)
MCA timer: darwin (MCA v2.0, API v2.0, Component v1.3)
MCA installdirs: env (MCA v2.0, API v2.0, Component v1.3)
MCA installdirs: config (MCA v2.0, API v2.0, Component v1.3)
MCA dpm: orte (MCA v2.0, API v2.0, Component v1.3)
MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.3)
MCA allocator: basic (MCA v2.0, API v2.0, Component v1.3)
MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.3)
MCA coll: basic (MCA v2.0, API v2.0, Component v1.3)
MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.3)
MCA coll: inter (MCA v2.0, API v2.0, Component v1.3)
MCA coll: self (MCA v2.0, API v2.0, Component v1.3)
MCA coll: sm (MCA v2.0, API v2.0, Component v1.3)
MCA coll: tuned (MCA v2.0, API v2.0, Component v1.3)
MCA io: romio (MCA v2.0, API v2.0, Component v1.3)
MCA mpool: fake (MCA v2.0, API v2.0, Component v1.3)
MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.3)
MCA mpool: sm (MCA v2.0, API v2.0, Component v1.3)
MCA pml: cm (MCA v2.0, API v2.0, Component v1.3)
MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.3)
MCA pml: v (MCA v2.0, API v2.0, Component v1.3)
MCA bml: r2 (MCA v2.0, API v2.0, Component v1.3)
MCA rcache: vma (MCA v2.0, API v2.0, Component v1.3)
MCA btl: self (MCA v2.0, API v2.0, Component v1.3)
MCA btl: sm (MCA v2.0, API v2.0, Component v1.3)
MCA btl: tcp (MCA v2.0, API v2.0, Component v1.3)
MCA topo: unity (MCA v2.0, API v2.0, Component v1.3)
MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.3)
MCA osc: rdma (MCA v2.0, API v2.0, Component v1.3)
MCA iof: hnp (MCA v2.0, API v2.0, Component v1.3)
MCA iof: orted (MCA v2.0, API v2.0, Component v1.3)
MCA iof: tool (MCA v2.0, API v2.0, Component v1.3)
MCA oob: tcp (MCA v2.0, API v2.0, Component v1.3)
MCA odls: default (MCA v2.0, API v2.0, Component v1.3)
MCA ras: slurm (MCA v2.0, API v2.0, Component v1.3)
MCA rmaps: rank_file (MCA v2.0, API v2.0, Component
v1.3)
MCA rmaps: round_robin (MCA v2.0, API v2.0, Component
v1.3)
MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.3)
MCA rml: oob (MCA v2.0, API v2.0, Component v1.3)
MCA routed: binomial (MCA v2.0, API v2.0, Component v1.3)
MCA routed: direct (MCA v2.0, API v2.0, Component v1.3)
MCA routed: linear (MCA v2.0, API v2.0, Component v1.3)
MCA plm: rsh (MCA v2.0, API v2.0, Component v1.3)
MCA plm: slurm (MCA v2.0, API v2.0, Component v1.3)
MCA plm: xgrid (MCA v2.0, API v2.0, Component v1.3)
MCA filem: rsh (MCA v2.0, API v2.0, Component v1.3)
MCA errmgr: default (MCA v2.0, API v2.0, Component v1.3)
MCA ess: env (MCA v2.0, API v2.0, Component v1.3)
MCA ess: hnp (MCA v2.0, API v2.0, Component v1.3)
MCA ess: singleton (MCA v2.0, API v2.0, Component
v1.3)
MCA ess: slurm (MCA v2.0, API v2.0, Component v1.3)
MCA ess: tool (MCA v2.0, API v2.0, Component v1.3)
MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.3)
MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.3)
Do I have to configure OpenMPI-1.3 in a different way than
OpenMPI-1.2.8?
Kind regards,
Frank
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