Hi Josh/All,
I just tested a simple c application with blcr and it worked
fine.
##########################################
#include <unistd.h>
#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <fcntl.h>
#include <limits.h>
#include <sys/types.h>
#include <sys/stat.h>
#include<signal.h>
#include <fcntl.h>
#include <unistd.h>
char * getprocessid()
{
FILE * read_fp;
char buffer[BUFSIZ + 1];
int chars_read;
char * buffer_data="12345";
memset(buffer, '\0', sizeof(buffer));
read_fp = popen("uname -a", "r");
/*
...
*/
return buffer_data;
}
int main(int argc, char ** argv)
{
int rank;
int size;
char * thedata;
int n=0;
thedata=getprocessid();
printf(" the data is %s", thedata);
while( n <10)
{
printf("value is %d\n", n);
n++;
sleep(1);
}
printf("bye\n");
}
jean@sun32:/tmp$ cr_run ./pipetest3 &
[1] 31807
jean@sun32:~$ the data is 12345value is 0
value is 1
value is 2
...
value is 9
bye
jean@sun32:/tmp$ cr_checkpoint 31807
jean@sun32:/tmp$ cr_restart context.31807
value is 7
value is 8
value is 9
bye
##############################################
It looks like its more to do with Openmpi. Any ideas from you side?
Thank you.
Kind regards,
Jean.
--- On Mon, 29/3/10, Josh Hursey <[email protected]> wrote:
From: Josh Hursey <[email protected]>
Subject: Re: [OMPI users] Segmentation fault (11)
To: "Open MPI Users" <[email protected]>
List-Post: [email protected]
Date: Monday, 29 March, 2010, 16:08
I wonder if this is a bug with BLCR (since the segv stack is in the BLCR
thread). Can you try an non-MPI version of this application that uses popen(),
and see if BLCR properly checkpoints/restarts it?
If so, we can start to see what Open MPI might be doing to confuse things, but
I suspect that this might be a bug with BLCR. Either way let us know what you
find out.
Cheers,
Josh
On Mar 27, 2010, at 6:17 AM, jody wrote:
> I'm not sure if this is the cause of your problems:
> You define the constant BUFFER_SIZE, but in the code you use a constant
> called BUFSIZ...
> Jody
>
>
> On Fri, Mar 26, 2010 at 10:29 PM, Jean Potsam <[email protected]> wrote:
> Dear All,
> I am having a problem with openmpi . I have installed openmpi
>1.4 and blcr 0.8.1
>
> I have written a small mpi application as follows below:
>
> #######################
> #include <unistd.h>
> #include <stdlib.h>
> #include <stdio.h>
> #include <string.h>
> #include <fcntl.h>
> #include <limits.h>
> #include <sys/types.h>
> #include <sys/stat.h>
> #include <mpi.h>
> #include<signal.h>
> #include <fcntl.h>
> #include <unistd.h>
>
> #define BUFFER_SIZE PIPE_BUF
>
> char * getprocessid()
> {
> FILE * read_fp;
> char buffer[BUFSIZ + 1];
> int chars_read;
> char * buffer_data="12345";
> memset(buffer, '\0', sizeof(buffer));
> read_fp = popen("uname -a", "r");
> /*
> ...
> */
> return buffer_data;
> }
>
> int main(int argc, char ** argv)
> {
> MPI_Status status;
> int rank;
> int size;
> char * thedata;
> MPI_Init(&argc, &argv);
> MPI_Comm_size(MPI_COMM_WORLD,&size);
> MPI_Comm_rank(MPI_COMM_WORLD,&rank);
> thedata=getprocessid();
> printf(" the data is %s", thedata);
> MPI_Finalize();
> }
> ############################
>
> I get the following result:
>
> #######################
> jean@sunn32:~$ mpicc pipetest2.c -o pipetest2
> jean@sunn32:~$ mpirun -np 1 -am ft-enable-cr -mca btl ^openib pipetest2
> [sun32:19211] *** Process received signal ***
> [sun32:19211] Signal: Segmentation fault (11)
> [sun32:19211] Signal code: Address not mapped (1)
> [sun32:19211] Failing at address: 0x4
> [sun32:19211] [ 0] [0xb7f3c40c]
> [sun32:19211] [ 1] /lib/libc.so.6(cfree+0x3b) [0xb796868b]
> [sun32:19211] [ 2] /usr/local/blcr/lib/libcr.so.0(cri_info_free+0x2a)
> [0xb7a5925a]
> [sun32:19211] [ 3] /usr/local/blcr/lib/libcr.so.0 [0xb7a5ac72]
> [sun32:19211] [ 4] /lib/libc.so.6(__libc_fork+0x186) [0xb7991266]
> [sun32:19211] [ 5] /lib/libc.so.6(_IO_proc_open+0x7e) [0xb7958b6e]
> [sun32:19211] [ 6] /lib/libc.so.6(popen+0x6c) [0xb7958dfc]
> [sun32:19211] [ 7] pipetest2(getprocessid+0x42) [0x8048836]
> [sun32:19211] [ 8] pipetest2(main+0x4d) [0x8048897]
> [sun32:19211] [ 9] /lib/libc.so.6(__libc_start_main+0xe5) [0xb7912455]
> [sun32:19211] [10] pipetest2 [0x8048761]
> [sun32:19211] *** End of error message ***
> #####################################################
>
>
> However, If I compile the application using gcc, it works fine. The problem
> arises with:
> read_fp = popen("uname -a", "r");
>
> Does anyone has an idea how to resolve this problem?
>
> Many thanks
>
> Jean
>
>
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>
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