Thank you, Samuel
I was hoping not to have to change my Gnu auto tools in the cluster.
I remain a bit skeptical that libtool is the main culprit.
Somehow OpenMPI 1.4.3 builds fine in the very same computer
with the same libtool, same PGI 11.7, same compiler flags.
In the OMPI 1.4.3 make log there are several lines with 'libtool: link: pgcc'
followed
by all compiler flags.
In addition, the specific line that links libopenmpi_malloc.so,
correctly strips off *all* compiler flags, it doesn't leave the '-tp' behind,
hence pgcc can do its job.
I would guess this is the right thing to do, no funny optimization flags chosen
by
the user in a malloc library.
Here it is:
libtool: link: pgcc -shared -fpic -DPIC .libs/dummy.o -lnsl -lutil -lc
-Wl,-soname -Wl,libopenmpi_malloc.so.0 -o .libs/libopenmpi_malloc.so.0.0.0
However, the same setup doesn't work with OMPI 1.4.4.
That particular line in the make log is [note the added '-tp']:
libtool: link: pgcc -shared -fpic -DPIC .libs/dummy.o -lnsl -lutil -lc -tp
-Wl,-soname -Wl,libopenmpi_malloc.so.0 -o .libs/libopenmpi_malloc.so.0.0.0
Hence, I am more inclined to think that there was a change from the 1.4.3 to
the 1.4.4 configure script, that somehow forgot how to handle the PGI quirks,
and is no longer stripping correctly the user CFLAGS when it links the
libopenmpi_malloc.so library.
I can send the gzipped configure and make logs of 1.4.3 and 1.4.4 if that helps.
I didn't do it so as not to bother the list with bulky files.
Many thanks,
Gus Correa
On Nov 8, 2011, at 4:24 PM, Samuel K. Gutierrez wrote:
> Hi,
>
> I think I've seen this before.
>
> I can't speak to the details surrounding this issue, but when I upgraded to
> the newest version of libtool, the problem went away <shrug>.
>
> Take a look at "Use of GNU m4, Autoconf, Automake, and Libtool" in our
> HACKING file. libtool-2.4.2.tar.gz **should** work, if that's the problem
> that you are experiencing.
>
> I would suggest starting with a fresh source tree, before you try again.
>
> Hope that helps,
>
> Samuel K. Gutierrez
> Los Alamos National Laboratory
>
> On Nov 8, 2011, at 2:06 PM, Gustavo Correa wrote:
>
>> Dear OpenMPI pros
>>
>> When I try to build OpenMPI 1.4.4 with PGI compilers 11.7 [pgcc, pgcc,
>> pgfortran]
>> I get the awkward error message on the bottom of this email.
>>
>> I say awkward because I assigned the value 'shanghai-64' to the '-tp' flag,
>> as you can see from the successful 'libtool:compile' command in the error
>> message.
>> However, the subsequent 'libtool:link' command has '-tp' without a value.
>> Note that the remaining flags '-fast -Mfprelaxed' were also dropped in the
>> libtool:link command.
>> The 'partial' flag '-tp' is worse than no flag at all, and the pgcc compiler
>> fails.
>>
>> By contrast, OpenMPI 1.4.3 builds just fine with the same compilers and
>> the same compiler flags.
>>
>> Is this the revival of an old idiosyncrasy between libtool and PGI?
>> Could perhaps the OMPI 1.4.4. configure script have stripped off my compiler
>> flags after '-tp',
>> when passing it to libtool in link mode? [Somehow it works in 1.4.3.]
>> Is there any workaround or patch?
>>
>>
>> Many thanks,
>> Gus Correa
>>
>> ******
>>
>> More details:
>> CentOS Linux 5.2 x86_64, libtool 1.5.22, PGI 11.7.
>>
>> Configure parameters:
>> export CC=pgcc
>> export CXX=pgcpp
>> export F77='pgfortran'
>> export FC=${F77}
>>
>> export CFLAGS='-tp shanghai-64 -fast -Mfprelaxed'
>> export CXXFLAGS=${CFLAGS}
>> export FFLAGS=${CFLAGS}
>> export FCFLAGS=${FFLAGS}
>>
>> ../configure \
>> --prefix=${MYINSTALLDIR} \
>> --with-libnuma=/usr \
>> --with-tm=/opt/torque/2.4.11/gnu-4.1.2 \
>> --with-openib=/usr \
>> --enable-static \
>> 2>&1 | tee configure_${build_id}.log
>>
>> ****
>>
>> #################### ERROR MESSAGE ###########################
>>
>> libtool: compile: pgcc -DHAVE_CONFIG_H -I.
>> -I../../../../../opal/mca/memory/ptmalloc2 -I../../../../opal/include
>> -I../../../../orte/include -I../../../../ompi/include
>> -I../../../../opal/mca/paffinity/linux/plpa/src/libplpa -DMALLOC_DEBUG=0
>> -D_GNU_SOURCE=1 -DUSE_TSD_DATA_HACK=1 -DMALLOC_HOOKS=1
>> -I../../../../../opal/mca/memory/ptmalloc2/sysdeps/pthread
>> -I../../../../../opal/mca/memory/ptmalloc2/sysdeps/generic -I../../../../..
>> -I../../../.. -I../../../../../opal/include -I../../../../../orte/include
>> -I../../../../../ompi/include -D_REENTRANT -DNDEBUG -tp shanghai-64 -fast
>> -Mfprelaxed -c ../../../../../opal/mca/memory/ptmalloc2/dummy.c -o dummy.o
>> >/dev/null 2>&1
>> /bin/sh ../../../../libtool --tag=CC --mode=link pgcc -DNDEBUG -tp
>> shanghai-64 -fast -Mfprelaxed -export-dynamic -o libopenmpi_malloc.la
>> -rpath /home/sw/openmpi/1.4.4/pgi-11.7/lib dummy.lo -lnsl -lutil
>> libtool: link: pgcc -shared -fpic -DPIC .libs/dummy.o -lnsl -lutil -lc
>> -tp -Wl,-soname -Wl,libopenmpi_malloc.so.0 -o
>> .libs/libopenmpi_malloc.so.0.0.0
>> pgcc-Fatal-Switch -tp must have a value
>> -tp=amd64|amd64e|athlon|athlonxp|barcelona|barcelona-32|barcelona-64|core2|core2-32|core2-64|istanbul|istanbul-32|istanbul-64|k7|k8|k8-32|k8-64|k8-64e|nehalem|nehalem-32|nehalem-64|p5|p6|p7|p7-32|p7-64|penryn|penryn-32|penryn-64|piii|piv|px|px-32|px-64|sandybridge|sandybridge-32|sandybridge-64|shanghai|shanghai-32|shanghai-64|x64
>> Choose target processor type
>> amd64 Same as -tp k8-64
>> amd64e Same as -tp k8-64e
>> athlon AMD 32-bit Athlon Processor
>> athlonxp AMD 32-bit Athlon XP Processor
>> barcelona AMD Barcelona processor
>> barcelona-32 AMD Barcelona processor, 32-bit mode
>> barcelona-64 AMD Barcelona processor, 64-bit mode
>> core2 Intel Core-2 Architecture
>> core2-32 Intel Core-2 Architecture, 32-bit mode
>> core2-64 Intel Core-2 Architecture, 64-bit mode
>> istanbul AMD Istanbul processor
>> istanbul-32 AMD Istanbul processor, 32-bit mode
>> istanbul-64 AMD Istanbul processor, 64-bit mode
>> k7 AMD Athlon Processor
>> k8 AMD64 Processor
>> k8-32 AMD64 Processor 32-bit mode
>> k8-64 AMD64 Processor 64-bit mode
>> k8-64e AMD64 Processor rev E or later, 64-bit mode
>> nehalem Intel Nehalem processor
>> nehalem-32 Intel Nehalem processor, 32-bit mode
>> nehalem-64 Intel Nehalem processor, 64-bit mode
>> p5 Intel P5 Pentium Architecture
>> p6 Intel P6 Architecture (Pentium Pro, II, III)
>> p7 Intel P7 Architecture (Pentium 4, Xeon, Centrino)
>> p7-32 Intel P7 Architecture (Pentium 4, Xeon, Centrino)
>> p7-64 Intel P7 Architecture with EM64T, 64-bit mode
>> penryn Intel Penryn Architecture
>> penryn-32 Intel Penryn Architecture, 32-bit mode
>> penryn-64 Intel Penryn Architecture, 64-bit mode
>> piii Intel Pentium III
>> piv Intel Pentium 4
>> px Generic x86 Processor
>> px-32 Generic x86 Processor, 32-bit mode
>> px-64 Generic x86-64 architecture
>> sandybridge Intel SandyBridge processor
>> sandybridge-32 Intel SandyBridge processor, 32-bit mode
>> sandybridge-64 Intel SandyBridge processor, 64-bit mode
>> shanghai AMD Shanghai processor
>> shanghai-32 AMD Shanghai processor, 32-bit mode
>> shanghai-64 AMD Shanghai processor, 64-bit mode
>> x64 Unified AMD/Intel 64-bit mode
>> make[2]: *** [libopenmpi_malloc.la] Error 2
>> make[2]: Leaving directory
>> `/home/swinst/openmpi/1.4.4/openmpi-1.4.4/build_pgi-11.7/opal/mca/memory/ptmalloc2'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory
>> `/home/swinst/openmpi/1.4.4/openmpi-1.4.4/build_pgi-11.7/opal'
>> make: *** [all-recursive] Error 1
>>
>>
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