I'm going to have to defer this to those who regularly build on Crays... Sandia / LANL?
On Mar 2, 2012, at 12:12 AM, Abhinav Sarje wrote: > Hi again, > > I just tried building afresh -> svn co, autogen, configure, make. And > it failed at the same point as before: >>>> CCLD ompi_info >>>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64' > > Any more ideas/fixes? > > Thanks all. > Abhinav. > > On Fri, Mar 2, 2012 at 8:14 AM, Abhinav Sarje <asa...@lbl.gov> wrote: >> yes, I did a full autogen, configure, make clean and make all >> >> >> On Thu, Mar 1, 2012 at 10:03 PM, Jeffrey Squyres <jsquy...@cisco.com> wrote: >>> Did you do a full autogen / configure / make clean / make all ? >>> >>> >>> On Mar 1, 2012, at 8:53 AM, Abhinav Sarje wrote: >>> >>>> Thanks Ralph. That did help, but only till the next hurdle. Now the >>>> build fails at the following point with an 'undefined reference': >>>> ----------- >>>> Making all in tools/ompi_info >>>> make[2]: Entering directory >>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info' >>>> CC ompi_info.o >>>> CC output.o >>>> CC param.o >>>> CC components.o >>>> CC version.o >>>> CCLD ompi_info >>>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64' >>>> make[2]: *** [ompi_info] Error 2 >>>> make[2]: Leaving directory >>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info' >>>> make[1]: *** [all-recursive] Error 1 >>>> make[1]: Leaving directory >>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>>> make: *** [all-recursive] Error 1 >>>> ----------- >>>> >>>> >>>> >>>> >>>> >>>> >>>> On Thu, Mar 1, 2012 at 5:25 PM, Ralph Castain <r...@open-mpi.org> wrote: >>>>> You need to update your source code - this was identified and fixed on >>>>> Wed. Unfortunately, our trunk is a developer's environment. While we try >>>>> hard to keep it fully functional, bugs do occasionally work their way >>>>> into the code. >>>>> >>>>> On Mar 1, 2012, at 1:37 AM, Abhinav Sarje wrote: >>>>> >>>>>> Hi Nathan, >>>>>> >>>>>> I tried building on an internal login node, and it did not fail at the >>>>>> previous point. But, after compiling for a very long time, it failed >>>>>> while building libmpi.la, with a multiple definition error: >>>>>> ---------- >>>>>> ... >>>>>> CC mpiext/mpiext.lo >>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-attr_fn_f.lo >>>>>> CC >>>>>> mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-conversion_fn_null_f.lo >>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-f90_accessors.lo >>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-strings.lo >>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-test_constants_f.lo >>>>>> CCLD mpi/f77/base/libmpi_f77_base.la >>>>>> CCLD libmpi.la >>>>>> mca/fcoll/dynamic/.libs/libmca_fcoll_dynamic.a(fcoll_dynamic_file_write_all.o): >>>>>> In function `local_heap_sort': >>>>>> /global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/dynamic/../../../../../ompi/mca/fcoll/dynamic/fcoll_dynamic_file_write_all.c:1111: >>>>>> multiple definition of `local_heap_sort' >>>>>> mca/fcoll/static/.libs/libmca_fcoll_static.a(fcoll_static_file_write_all.o):/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/static/../../../../../ompi/mca/fcoll/static/fcoll_static_file_write_all.c:929: >>>>>> first defined here >>>>>> make[2]: *** [libmpi.la] Error 2 >>>>>> make[2]: Leaving directory >>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>>>>> make[1]: *** [all-recursive] Error 1 >>>>>> make[1]: Leaving directory >>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>>>>> make: *** [all-recursive] Error 1 >>>>>> ---------- >>>>>> >>>>>> Any idea why this is happening, and how to fix it? Again, I am using >>>>>> the XE6 platform configuration file. >>>>>> >>>>>> Abhinav. >>>>>> >>>>>> On Wed, Feb 29, 2012 at 12:13 AM, Nathan Hjelm <hje...@lanl.gov> wrote: >>>>>>> >>>>>>> >>>>>>> On Mon, 27 Feb 2012, Abhinav Sarje wrote: >>>>>>> >>>>>>>> Hi Nathan, Gus, Manju, >>>>>>>> >>>>>>>> I got a chance to try out the XE6 support build, but with no success. >>>>>>>> First I was getting this error: "PGC-F-0010-File write error occurred >>>>>>>> (temporary pragma .s file)". After searching online about this error, >>>>>>>> I saw that there is a patch at >>>>>>>> >>>>>>>> "https://svn.open-mpi.org/trac/ompi/attachment/ticket/2913/openmpi-trunk-ident_string.patch"; >>>>>>>> for this particular error. >>>>>>>> >>>>>>>> With the patched version, I did not get this error anymore, but got >>>>>>>> the unknown switch flag error for the flag "-march=amdfam10" >>>>>>>> (specified in the XE6 configuration in the dev trunk) at a particular >>>>>>>> point even if I use the '-noswitcherror' flag with the pgcc compiler. >>>>>>>> >>>>>>>> If I remove this flag (-march=amdfam10), the build fails later at the >>>>>>>> following point: >>>>>>>> ------------------------- >>>>>>>> Making all in mca/ras/alps >>>>>>>> make[2]: Entering directory >>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' >>>>>>>> CC ras_alps_component.lo >>>>>>>> CC ras_alps_module.lo >>>>>>>> PGC-F-0206-Can't find include file alps/apInfo.h >>>>>>>> (../../../../../orte/mca/ras/alps/ras_alps_module.c: 37) >>>>>>>> PGC/x86-64 Linux 11.10-0: compilation aborted >>>>>>>> make[2]: *** [ras_alps_module.lo] Error 1 >>>>>>>> make[2]: Leaving directory >>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' >>>>>>>> make[1]: *** [all-recursive] Error 1 >>>>>>>> make[1]: Leaving directory `/{mydir}/openmpi-dev-trunk/build/orte' >>>>>>>> make: *** [all-recursive] Error 1 >>>>>>>> -------------------------- >>>>>>> >>>>>>> >>>>>>> This is a known issue with Cray's frontend environment. Build on one of >>>>>>> the >>>>>>> internal login nodes. >>>>>>> >>>>>>> >>>>>>> -Nathan >>>>>>> >>>>>>> _______________________________________________ >>>>>>> users mailing list >>>>>>> us...@open-mpi.org >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>> >>>>>> _______________________________________________ >>>>>> users mailing list >>>>>> us...@open-mpi.org >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>> >>>>> >>>>> _______________________________________________ >>>>> users mailing list >>>>> us...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> -- >>> Jeff Squyres >>> jsquy...@cisco.com >>> For corporate legal information go to: >>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>> >>> >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
