Hmmm...looks like it was built with Slurm support - is your cluster running Slurm? Do you see an "srun" command - e.g., if you do "which srun", what do you get?
You should also do an "ls -R /usr/lib64/openmpi" and see what modules were installed. Send that along and let's see why it didn't find anything. On Jan 25, 2013, at 6:05 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> wrote: > Yes sir here it is: > > > Package: Open MPI mockbu...@c6b8.bsys.dev.centos.org > Distribution > Open MPI: 1.5.4 > Open MPI SVN revision: r25060 > Open MPI release date: Aug 18, 2011 > Open RTE: 1.5.4 > Open RTE SVN revision: r25060 > Open RTE release date: Aug 18, 2011 > OPAL: 1.5.4 > OPAL SVN revision: r25060 > OPAL release date: Aug 18, 2011 > Ident string: 1.5.4 > Prefix: /usr/lib64/openmpi > Configured architecture: x86_64-unknown-linux-gnu > Configure host: c6b8.bsys.dev.centos.org > Configured by: mockbuild > Configured on: Fri Jun 22 06:42:03 UTC 2012 > Configure host: c6b8.bsys.dev.centos.org > Built by: mockbuild > Built on: Fri Jun 22 06:46:48 UTC 2012 > Built host: c6b8.bsys.dev.centos.org > C bindings: yes > C++ bindings: yes > Fortran77 bindings: yes (all) > Fortran90 bindings: yes > Fortran90 bindings size: small > C compiler: gcc > C compiler absolute: /usr/bin/gcc > C compiler family name: GNU > C compiler version: 4.4.6 > C++ compiler: g++ > C++ compiler absolute: /usr/bin/g++ > Fortran77 compiler: gfortran > Fortran77 compiler abs: /usr/bin/gfortran > Fortran90 compiler: gfortran > Fortran90 compiler abs: /usr/bin/gfortran > C profiling: yes > C++ profiling: yes > Fortran77 profiling: yes > Fortran90 profiling: yes > C++ exceptions: no > Thread support: posix (MPI_THREAD_MULTIPLE: no, progress: no) > Sparse Groups: no > Internal debug support: no > MPI interface warnings: no > MPI parameter check: runtime > Memory profiling support: no > Memory debugging support: no > libltdl support: yes > Heterogeneous support: no > mpirun default --prefix: no > MPI I/O support: yes > MPI_WTIME support: gettimeofday > Symbol vis. support: yes > MPI extensions: affinity example > FT Checkpoint support: no (checkpoint thread: no) > MPI_MAX_PROCESSOR_NAME: 256 > MPI_MAX_ERROR_STRING: 256 > MPI_MAX_OBJECT_NAME: 64 > MPI_MAX_INFO_KEY: 36 > MPI_MAX_INFO_VAL: 256 > MPI_MAX_PORT_NAME: 1024 > MPI_MAX_DATAREP_STRING: 128 > MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.5.4) > MCA memchecker: valgrind (MCA v2.0, API v2.0, Component v1.5.4) > MCA memory: linux (MCA v2.0, API v2.0, Component v1.5.4) > MCA paffinity: hwloc (MCA v2.0, API v2.0, Component v1.5.4) > MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.5.4) > MCA carto: file (MCA v2.0, API v2.0, Component v1.5.4) > MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.5.4) > MCA maffinity: libnuma (MCA v2.0, API v2.0, Component v1.5.4) > MCA timer: linux (MCA v2.0, API v2.0, Component v1.5.4) > MCA installdirs: env (MCA v2.0, API v2.0, Component v1.5.4) > MCA installdirs: config (MCA v2.0, API v2.0, Component v1.5.4) > MCA dpm: orte (MCA v2.0, API v2.0, Component v1.5.4) > MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.5.4) > MCA allocator: basic (MCA v2.0, API v2.0, Component v1.5.4) > MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: basic (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: inter (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: self (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: sm (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: sync (MCA v2.0, API v2.0, Component v1.5.4) > MCA coll: tuned (MCA v2.0, API v2.0, Component v1.5.4) > MCA mpool: fake (MCA v2.0, API v2.0, Component v1.5.4) > MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.5.4) > MCA mpool: sm (MCA v2.0, API v2.0, Component v1.5.4) > MCA pml: bfo (MCA v2.0, API v2.0, Component v1.5.4) > MCA pml: csum (MCA v2.0, API v2.0, Component v1.5.4) > MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.5.4) > MCA pml: v (MCA v2.0, API v2.0, Component v1.5.4) > MCA bml: r2 (MCA v2.0, API v2.0, Component v1.5.4) > MCA rcache: vma (MCA v2.0, API v2.0, Component v1.5.4) > MCA btl: ofud (MCA v2.0, API v2.0, Component v1.5.4) > MCA btl: openib (MCA v2.0, API v2.0, Component v1.5.4) > MCA btl: self (MCA v2.0, API v2.0, Component v1.5.4) > MCA btl: sm (MCA v2.0, API v2.0, Component v1.5.4) > MCA btl: tcp (MCA v2.0, API v2.0, Component v1.5.4) > MCA topo: unity (MCA v2.0, API v2.0, Component v1.5.4) > MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.5.4) > MCA osc: rdma (MCA v2.0, API v2.0, Component v1.5.4) > MCA iof: hnp (MCA v2.0, API v2.0, Component v1.5.4) > MCA iof: orted (MCA v2.0, API v2.0, Component v1.5.4) > MCA iof: tool (MCA v2.0, API v2.0, Component v1.5.4) > MCA oob: tcp (MCA v2.0, API v2.0, Component v1.5.4) > MCA odls: default (MCA v2.0, API v2.0, Component v1.5.4) > MCA ras: cm (MCA v2.0, API v2.0, Component v1.5.4) > MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.5.4) > MCA ras: loadleveler (MCA v2.0, API v2.0, Component v1.5.4) > MCA ras: slurm (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: load_balance (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: resilient (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.5.4) > MCA rmaps: topo (MCA v2.0, API v2.0, Component v1.5.4) > MCA rml: oob (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: binomial (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: cm (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: direct (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: linear (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: radix (MCA v2.0, API v2.0, Component v1.5.4) > MCA routed: slave (MCA v2.0, API v2.0, Component v1.5.4) > MCA plm: rsh (MCA v2.0, API v2.0, Component v1.5.4) > MCA plm: rshd (MCA v2.0, API v2.0, Component v1.5.4) > MCA plm: slurm (MCA v2.0, API v2.0, Component v1.5.4) > MCA filem: rsh (MCA v2.0, API v2.0, Component v1.5.4) > MCA errmgr: default (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: env (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: hnp (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: singleton (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: slave (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: slurm (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: slurmd (MCA v2.0, API v2.0, Component v1.5.4) > MCA ess: tool (MCA v2.0, API v2.0, Component v1.5.4) > MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.5.4) > MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.5.4) > MCA grpcomm: hier (MCA v2.0, API v2.0, Component v1.5.4) > MCA notifier: command (MCA v2.0, API v1.0, Component v1.5.4) > MCA notifier: smtp (MCA v2.0, API v1.0, Component v1.5.4) > MCA notifier: syslog (MCA v2.0, API v1.0, Component v1.5.4) > > Regards, > Jingjie Yeo > Ph.D. Student > School of Mechanical and Aerospace Engineering > Nanyang Technological University, Singapore > From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of > Ralph Castain [r...@open-mpi.org] > Sent: Saturday, 26 January, 2013 9:58:04 AM > To: Open MPI Users > Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 > with OpenMPI > > Groan - I hate these bundled installs :-( > > If you do "ompi_info", what does it tell you? Could you please send it along? > > Thanks > > On Jan 25, 2013, at 5:51 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> wrote: > >> I tried to follow the installation instructions over here: >> >> http://amusecode.org/doc/install/install-prerequisites-redhat.html >> >> And I am using bash and yum. >> >> Regards, >> Jingjie Yeo >> Ph.D. Student >> School of Mechanical and Aerospace Engineering >> Nanyang Technological University, Singapore >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
