Jeff, Sorry for the late reply. The answer is: No, 1.14.1 has not fixed the problem (and indeed, that's what my Mac is running):
(28) $ make install | & tee makeinstall.log Making install in src ../config/install-sh -c -d '/Users/fortran/AutomakeBug/autobug14/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libfortran_stuff.la '/Users/fortran/AutomakeBug/autobug14/lib' libtool: install: /usr/bin/install -c .libs/libfortran_stuff.0.dylib /Users/fortran/AutomakeBug/autobug14/lib/libfortran_stuff.0.dylib install: .libs/libfortran_stuff.0.dylib: No such file or directory make[2]: *** [install-libLTLIBRARIES] Error 71 make[1]: *** [install-am] Error 2 make: *** [install-recursive] Error 1 This is the output from either the am12 or am14 test. If you have any options you'd like me to try with this, let me know. (For example, is there a way to make autotools *more* verbose? I've always tried to make it less so!) Matt On Fri, Mar 21, 2014 at 11:02 AM, Jeff Squyres (jsquyres) < jsquy...@cisco.com> wrote: > This is starting to smell like a Libtool and/or Automake bug -- it > created libmpi_usempi_ignore_tkr.dylib, but it tried to install > libmpi_usempi_ignore_tkr.0.dylib (notice the extra ".0"). :-\ > > This is both good and bad. > > Good: I can think of 2 ways to work around this issue off the top of my > head: > > 1. "make -k install" and ignore the error as it flashes by. The rest of > OMPI will install properly. Then cd into > build_dir/ompi/mpi/fortran/use-mpi-ignore-tkr/.libs. Copy > libmpi_usempi_ignore_tkr.* to $libdir (i.e., > /Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib, in your example below). > And you should be good to go. > > ...although you may need to do a similar thing in the > ompi/mpi/fortran/use-mpi-f08/.libs directory. > > 2. Somewhere in ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile will be the > filename "libmpi_usempi_ignore_tkr.0.dylib". Edit it to remove the ".0". > Then "make install" should work fine. (you might need to do the same in > use-mpi-f08/Makefile) > > Bad: we can't really fix this error if it really is a bug in Automake > and/or Libtool, but we can at least report it upstream. > > I've made a trivial Autotools test project ( > https://github.com/jsquyres/pgi-autotool-bug) to see if we can nail this > down a little more, and possibly use the results to report upstream. > > Here's the versions of Autotools that we use to make the OMPI 1.7.x series: > > Autoconf 2.69 > Automake 1.12.2 > Libtool 2.4.2 > m4 1.4.16 > > Attached is a tarball I made of the sample project using those versions. > Can you try building and installing this tarball on your system with the > same kinds of options you used with OMPI? Hopefully, you should see the > same error. If not, I need to tweak this project a bit more to make it > more like OMPI's build system behavior. > > If you can replicate the error, then also try the second attached tarball: > it's the same project, but bootstrapped with the latest versions of GNU > Automake (the others are already the most recent): > > Automake 1.14.1 > > This will let us see if automake 1.14.1 has fixed the issue. > > > > > On Mar 20, 2014, at 1:16 PM, Matt Thompson <fort...@gmail.com> wrote: > > > Jeff, here you go: > > > > (3) $ cd ompi/mpi/fortran/use-mpi-ignore-tkr > > total 2888 > > -rw-r--r-- 1 fortran staff 1.7K Apr 13 2013 Makefile.am > > -rw-r--r-- 1 fortran staff 215K Dec 17 21:09 > mpi-ignore-tkr-interfaces.h.in > > -rw-r--r-- 1 fortran staff 39K Dec 17 21:09 > mpi-ignore-tkr-file-interfaces.h.in > > -rw-r--r-- 1 fortran staff 1.5K Jan 27 19:04 mpi-ignore-tkr.F90 > > -rw-r--r-- 1 fortran staff 80K Feb 4 17:53 Makefile.in > > -rw-r--r-- 1 fortran staff 208K Mar 18 20:37 > mpi-ignore-tkr-interfaces.h > > -rw-r--r-- 1 fortran staff 38K Mar 18 20:37 > mpi-ignore-tkr-file-interfaces.h > > -rw-r--r-- 1 fortran staff 75K Mar 18 20:37 Makefile > > -rw-r--r-- 1 fortran staff 765K Mar 18 20:47 mpi.mod > > -rw-r--r-- 1 fortran staff 280B Mar 18 20:47 mpi-ignore-tkr.lo > > -rw-r--r-- 1 fortran staff 1.0K Mar 18 20:47 > libmpi_usempi_ignore_tkr.la > > Directory: > /Users/fortran/MPI/src/openmpi-1.7.4/ompi/mpi/fortran/use-mpi-ignore-tkr > > (4) $ make clean > > test -z "*~ .#*" || rm -f *~ .#* > > test -z "libmpi_usempi_ignore_tkr.la" || rm -f > libmpi_usempi_ignore_tkr.la > > rm -f ./so_locations > > rm -rf .libs _libs > > rm -f *.o > > test -z "*.mod" || rm -f *.mod > > rm -f *.lo > > (5) $ make V=1 > > /bin/sh ../../../../libtool --tag=FC --mode=compile pgfortran > -DHAVE_CONFIG_H -I. -I../../../../opal/include -I../../../../orte/include > -I../../../../ompi/include > -I../../../../opal/mca/hwloc/hwloc172/hwloc/include/private/autogen > -I../../../../opal/mca/hwloc/hwloc172/hwloc/include/hwloc/autogen > -DOMPI_PROFILE_LAYER=0 -DOMPI_COMPILING_FORTRAN_WRAPPERS=1 -I../../../.. > -D_REENTRANT > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/hwloc/hwloc172/hwloc/include > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/event/libevent2021/libevent > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/event/libevent2021/libevent/include > -I../../../../ompi/include -I../../../../ompi/include -I../../../.. > -I../../../.. -m64 -c -o mpi-ignore-tkr.lo mpi-ignore-tkr.F90 > > libtool: compile: pgfortran -DHAVE_CONFIG_H -I. > -I../../../../opal/include -I../../../../orte/include > -I../../../../ompi/include > -I../../../../opal/mca/hwloc/hwloc172/hwloc/include/private/autogen > -I../../../../opal/mca/hwloc/hwloc172/hwloc/include/hwloc/autogen > -DOMPI_PROFILE_LAYER=0 -DOMPI_COMPILING_FORTRAN_WRAPPERS=1 -I../../../.. > -D_REENTRANT > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/hwloc/hwloc172/hwloc/include > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/event/libevent2021/libevent > -I/Users/fortran/MPI/src/openmpi-1.7.4/opal/mca/event/libevent2021/libevent/include > -I../../../../ompi/include -I../../../../ompi/include -I../../../.. > -I../../../.. -m64 -c mpi-ignore-tkr.F90 -o .libs/mpi-ignore-tkr.o > > /bin/sh ../../../../libtool --tag=FC --mode=link pgfortran > -I../../../../ompi/include -I../../../../ompi/include -I../../../.. > -I../../../.. -m64 -export-dynamic -m64 -o > libmpi_usempi_ignore_tkr.la-rpath > /Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib > mpi-ignore-tkr.lo > > libtool: link: (cd ".libs" && rm -f "libmpi_usempi_ignore_tkr.dylib" && > ln -s "libmpi_usempi_ignore_tkr.0.dylib" "libmpi_usempi_ignore_tkr.dylib") > > libtool: link: ( cd ".libs" && rm -f "libmpi_usempi_ignore_tkr.la" && > ln -s "../libmpi_usempi_ignore_tkr.la" "libmpi_usempi_ignore_tkr.la" ) > > (6) $ find . > > . > > ./.libs > > ./.libs/libmpi_usempi_ignore_tkr.dylib > > ./.libs/libmpi_usempi_ignore_tkr.la > > ./.libs/libmpi_usempi_ignore_tkr.lai > > ./.libs/mpi-ignore-tkr.o > > ./libmpi_usempi_ignore_tkr.la > > ./Makefile > > ./Makefile.am > > ./Makefile.in > > ./mpi-ignore-tkr-file-interfaces.h > > ./mpi-ignore-tkr-file-interfaces.h.in > > ./mpi-ignore-tkr-interfaces.h > > ./mpi-ignore-tkr-interfaces.h.in > > ./mpi-ignore-tkr.F90 > > ./mpi-ignore-tkr.lo > > ./mpi.mod > > (7) $ make install > > ../../../../config/install-sh -c -d > '/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib' > > /bin/sh ../../../../libtool --mode=install /usr/bin/install -c > libmpi_usempi_ignore_tkr.la'/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib' > > libtool: install: /usr/bin/install -c > .libs/libmpi_usempi_ignore_tkr.0.dylib > /Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib/libmpi_usempi_ignore_tkr.0.dylib > > install: .libs/libmpi_usempi_ignore_tkr.0.dylib: No such file or > directory > > make[1]: *** [install-libLTLIBRARIES] Error 71 > > make: *** [install-am] Error 2 > > > > > > > > On Thu, Mar 20, 2014 at 8:37 AM, Jeff Squyres (jsquyres) < > jsquy...@cisco.com> wrote: > > Very odd. Your logfiles indicate that OMPI's configure found the right > ignore TKR syntax and decided to build the ignore TKR mpi module. > > > > ----- > > checking Fortran compiler ignore TKR syntax... not cached; checking > variants > > checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no > > checking for Fortran compiler support of !DEC$ ATTRIBUTES > NO_ARG_CHECK... no > > checking for Fortran compiler support of !$PRAGMA IGNORE_TKR... no > > checking for Fortran compiler support of !DIR$ IGNORE_TKR... yes > > checking Fortran compiler ignore TKR syntax... 1:real, > dimension(*):!DIR$ IGNORE_TKR > > checking if building Fortran 'use mpi' bindings... yes > > ----- > > > > And then the make logs indicate that it did, indeed, build the ignore > TKR mpi module. > > > > ----- > > Making all in mpi/fortran/use-mpi-ignore-tkr > > PPFC mpi-ignore-tkr.lo > > FCLD libmpi_usempi_ignore_tkr.la > > ----- > > > > And then make install fails: > > > > ----- > > Making install in mpi/fortran/use-mpi-ignore-tkr > > ../../../../config/install-sh -c -d > '/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib' > > /bin/sh ../../../../libtool --mode=install /usr/bin/install -c > libmpi_usempi_ignore_tkr.la'/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib' > > libtool: install: /usr/bin/install -c > .libs/libmpi_usempi_ignore_tkr.0.dylib > /Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc/lib/libmpi_usempi_ignore_tkr.0.dylib > > install: .libs/libmpi_usempi_ignore_tkr.0.dylib: No such file or > directory > > ----- > > > > Can you do the following: > > > > ----- > > cd ompi_build_dir/ompi/mpi/fortran/use-mpi-ignore-tkr > > make clean > > make V=1 > > find . > > make install > > ----- > > > > > > On Mar 20, 2014, at 7:44 AM, Matt Thompson <fort...@gmail.com> wrote: > > > > > Jeff, > > > > > > It does not: > > > > > > Directory: > /Users/fortran/MPI/src/openmpi-1.7.4/ompi/mpi/fortran/use-mpi-ignore-tkr/.libs > > > (106) $ ls -ltr > > > total 1560 > > > -rw-r--r-- 1 fortran staff 784824 Mar 18 20:47 mpi-ignore-tkr.o > > > -rw-r--r-- 1 fortran staff 1021 Mar 18 20:47 > libmpi_usempi_ignore_tkr.lai > > > lrwxr-xr-x 1 fortran staff 30 Mar 18 20:47 > libmpi_usempi_ignore_tkr.la@ -> ../libmpi_usempi_ignore_tkr.la > > > lrwxr-xr-x 1 fortran staff 32 Mar 18 20:47 > libmpi_usempi_ignore_tkr.dylib@ -> libmpi_usempi_ignore_tkr.0.dylib > > > > > > which I guess makes sense. > > > > > > I'm attaching the logfiles from my compile attempt. This is the > "basic" attempt as can be seen from the config.log file. > > > > > > Thanks, > > > Matt > > > > > > > > > > > > On Thu, Mar 20, 2014 at 6:45 AM, Jeff Squyres (jsquyres) < > jsquy...@cisco.com> wrote: > > > Sorry for the delay; we're working on releasing 1.7.5 and that's > consuming all my time... > > > > > > That's a strange error. Can you confirm whether > ompi_buil_dir/ompi/mpi/fortran/use-mpi-ignore-tkr/.libs/libmpi_usempi_ignore_tkr.0.dylib > exists or not? > > > > > > Can you send all the info listed here: > > > > > > http://www.open-mpi.org/community/help/ > > > > > > > > > On Mar 18, 2014, at 8:59 PM, Matt Thompson <fort...@gmail.com> wrote: > > > > > > > All, > > > > > > > > I recently downloaded PGI's Free OS X Fortran compiler: > > > > > > > > http://www.pgroup.com/products/freepgi/ > > > > > > > > in the hope of potentially using it to compile a weather model I > work with GEOS-5. That model requires an MPI stack and I usually start (and > end) with Open MPI on a desktop. > > > > > > > > So, I grabbed Open MPI 1.7.4 and tried compiling it in a few ways. > In each case, my C and C++ compilers were the built-in clang-y gcc and g++ > from Xcode, while pgfortran was the Fortran compiler. I tried a few > different configures from the basic: > > > > > > > > $ ./configure CC=gcc CXX=g++ F77=pgfortran FC=pgfortran > CFLAGS='-m64' CXXFLAGS='-m64' FCFLAGS='-m64' FFLAGS='-m64' > --prefix=/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3 > > > > > > > > all the way to the "let's try every flag Google says I might use" > version of: > > > > > > > > $ ./configure CC=gcc CXX=g++ F77=pgfortran FC=pgfortran CFLAGS='-m64 > -Xclang -target-feature -Xclang -aes -mmacosx-version-min=10.8' > CXXFLAGS='-m64 -Xclang -target-feature -Xclang -aes > -mmacosx-version-min=10.8' LDFLAGS='-m64' FCFLAGS='-m64' FFLAGS='-m64' > --prefix=/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc-mmacosx > > > > > > > > In every case, the configure, make, and make check worked well > without error, but running a 'make install' led to: > > > > > > > > Making install in mpi/fortran/use-mpi-ignore-tkr > > > > ../../../../config/install-sh -c -d > '/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc-mmacosx/lib' > > > > /bin/sh ../../../../libtool --mode=install /usr/bin/install -c > libmpi_usempi_ignore_tkr.la'/Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc-mmacosx/lib' > > > > libtool: install: /usr/bin/install -c > .libs/libmpi_usempi_ignore_tkr.0.dylib > /Users/fortran/MPI/openmpi_1.7.4-pgi_14.3-gcc-mmacosx/lib/libmpi_usempi_ignore_tkr.0.dylib > > > > install: .libs/libmpi_usempi_ignore_tkr.0.dylib: No such file or > directory > > > > make[3]: *** [install-libLTLIBRARIES] Error 71 > > > > make[2]: *** [install-am] Error 2 > > > > make[1]: *** [install-recursive] Error 1 > > > > make: *** [install-recursive] Error 1 > > > > > > > > Any ideas on how to overcome this? > > > > > > > > Thanks, > > > > Matt Thompson > > > > -- > > > > "And, isn't sanity really just a one-trick pony anyway? I mean all > you > > > > get is one trick: rational thinking. But when you're good and crazy, > > > > oooh, oooh, oooh, the sky is the limit!" -- The Tick > > > > > > > > _______________________________________________ > > > > users mailing list > > > > us...@open-mpi.org > > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > > > -- > > > Jeff Squyres > > > jsquy...@cisco.com > > > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > > > > _______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > > > > > > -- > > > "And, isn't sanity really just a one-trick pony anyway? I mean all you > > > get is one trick: rational thinking. But when you're good and crazy, > > > oooh, oooh, oooh, the sky is the limit!" -- The Tick > > > > > > > <OMPI-1.7.4-Logfiles.tar.bz2>_______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > -- > > Jeff Squyres > > jsquy...@cisco.com > > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > > -- > > "And, isn't sanity really just a one-trick pony anyway? I mean all you > > get is one trick: rational thinking. But when you're good and crazy, > > oooh, oooh, oooh, the sky is the limit!" -- The Tick > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- "And, isn't sanity really just a one-trick pony anyway? I mean all you get is one trick: rational thinking. But when you're good and crazy, oooh, oooh, oooh, the sky is the limit!" -- The Tick
