could you try just for curiosity to force to use OMPIO? e.g. mpirun --mca io ompio ....
Thanks Edgar On 5/15/2014 3:56 AM, CANELA-XANDRI Oriol wrote: > Hi, I installed and tried with version 1.8.1 but it also fails. I see the > error when there are some processes without any matrix block. It's not a > common situation, but this makes me feel unsure about I am not doing > something wrong. The error I get is: > > *** Error in `./binary': free(): invalid size: 0x0000000000a34c00 *** > [oriol-VirtualBox:13975] *** Process received signal *** > [oriol-VirtualBox:13975] Signal: Aborted (6) > [oriol-VirtualBox:13975] Signal code: (-6) > [oriol-VirtualBox:13969] *** Process received signal *** > [oriol-VirtualBox:13969] Signal: Aborted (6) > [oriol-VirtualBox:13969] Signal code: (-6) > ======= Backtrace: ========= > /lib/x86_64-linux-gnu/libc.so.6(+0x80996)[0x7f5844a8d996] > [oriol-VirtualBox:13969] [ 0] > /lib/x86_64-linux-gnu/libc.so.6(+0x36ff0)[0x7f06a50a7ff0] > [oriol-VirtualBox:13969] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37)[0x7f06a50a7f77] > [oriol-VirtualBox:13969] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x148)[0x7f06a50ab5e8] > [oriol-VirtualBox:13969] [ 3] > /lib/x86_64-linux-gnu/libc.so.6(+0x744fb)[0x7f06a50e54fb] > [oriol-VirtualBox:13969] [ 4] > /lib/x86_64-linux-gnu/libc.so.6(+0x80996)[0x7f06a50f1996] > [oriol-VirtualBox:13969] [ 5] > /usr/local/lib/openmpi/mca_io_romio.so(ADIOI_Delete_flattened+0x62)[0x7f0691e12c02] > [oriol-VirtualBox:13969] [ 6] > /usr/local/lib/openmpi/mca_io_romio.so(ADIO_Close+0x1f9)[0x7f0691df7189] > [oriol-VirtualBox:13969] [ 7] > /usr/local/lib/openmpi/mca_io_romio.so(mca_io_romio_dist_MPI_File_close+0xe8)[0x7f0691de9dd8] > [oriol-VirtualBox:13969] [ 8] > /usr/local/lib/libmpi.so.1(+0x3a2c6)[0x7f06a5ea02c6] > [oriol-VirtualBox:13969] [ 9] > /usr/local/lib/libmpi.so.1(ompi_file_close+0x41)[0x7f06a5ea0811] > [oriol-VirtualBox:13969] [10] > /usr/local/lib/libmpi.so.1(PMPI_File_close+0x78)[0x7f06a5edc118] > [oriol-VirtualBox:13969] [11] ./binary[0x42099e] > [oriol-VirtualBox:13969] [12] ./binary[0x48ed86] > [oriol-VirtualBox:13969] [13] ./binary[0x40e49f] > [oriol-VirtualBox:13969] [14] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f06a5092de5] > [oriol-VirtualBox:13969] [15] ./binary[0x40d679] > [oriol-VirtualBox:13969] *** End of error message *** > [oriol-VirtualBox:13975] [ 0] > /lib/x86_64-linux-gnu/libc.so.6(+0x36ff0)[0x7f1857201ff0] > [oriol-VirtualBox:13975] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37)[0x7f1857201f77] > [oriol-VirtualBox:13975] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x148)[0x7f18572055e8] > [oriol-VirtualBox:13975] [ 3] > /lib/x86_64-linux-gnu/libc.so.6(+0x744fb)[0x7f185723f4fb] > [oriol-VirtualBox:13975] [ 4] > /lib/x86_64-linux-gnu/libc.so.6(+0x80996)[0x7f185724b996] > [oriol-VirtualBox:13975] [ 5] > /usr/local/lib/openmpi/mca_io_romio.so(ADIOI_Delete_flattened+0x62)[0x7f18459d2c02] > [oriol-VirtualBox:13975] [ 6] > /usr/local/lib/openmpi/mca_io_romio.so(ADIO_Close+0x1f9)[0x7f18459b7189] > [oriol-VirtualBox:13975] [ 7] > /usr/local/lib/openmpi/mca_io_romio.so(mca_io_romio_dist_MPI_File_close+0xe8)[0x7f18459a9dd8] > [oriol-VirtualBox:13975] [ 8] > /usr/local/lib/libmpi.so.1(+0x3a2c6)[0x7f1857ffa2c6] > [oriol-VirtualBox:13975] [ 9] > /usr/local/lib/libmpi.so.1(ompi_file_close+0x41)[0x7f1857ffa811] > [oriol-VirtualBox:13975] [10] > /usr/local/lib/libmpi.so.1(PMPI_File_close+0x78)[0x7f1858036118] > [oriol-VirtualBox:13975] [11] ./binary[0x42099e] > [oriol-VirtualBox:13975] [12] ./binary[0x48ed86] > [oriol-VirtualBox:13975] [13] ./binary[0x40e49f] > [oriol-VirtualBox:13975] [14] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f18571ecde5] > [oriol-VirtualBox:13975] [15] ./binary[0x40d679] > [oriol-VirtualBox:13975] *** End of error message *** > [oriol-VirtualBox:13972] *** Process received signal *** > [oriol-VirtualBox:13972] Signal: Aborted (6) > [oriol-VirtualBox:13972] Signal code: (-6) > [oriol-VirtualBox:13972] [ 0] > /lib/x86_64-linux-gnu/libc.so.6(+0x36ff0)[0x7f5844a43ff0] > [oriol-VirtualBox:13972] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37)[0x7f5844a43f77] > [oriol-VirtualBox:13972] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x148)[0x7f5844a475e8] > [oriol-VirtualBox:13972] [ 3] > /lib/x86_64-linux-gnu/libc.so.6(+0x744fb)[0x7f5844a814fb] > [oriol-VirtualBox:13972] [ 4] > /lib/x86_64-linux-gnu/libc.so.6(+0x80996)[0x7f5844a8d996] > [oriol-VirtualBox:13972] [ 5] > /usr/local/lib/openmpi/mca_io_romio.so(ADIOI_Delete_flattened+0x62)[0x7f58315f2c02] > [oriol-VirtualBox:13972] [ 6] > /usr/local/lib/openmpi/mca_io_romio.so(ADIO_Close+0x1f9)[0x7f58315d7189] > [oriol-VirtualBox:13972] [ 7] > /usr/local/lib/openmpi/mca_io_romio.so(mca_io_romio_dist_MPI_File_close+0xe8)[0x7f58315c9dd8] > [oriol-VirtualBox:13972] [ 8] > /usr/local/lib/libmpi.so.1(+0x3a2c6)[0x7f584583c2c6] > [oriol-VirtualBox:13972] [ 9] > /usr/local/lib/libmpi.so.1(ompi_file_close+0x41)[0x7f584583c811] > [oriol-VirtualBox:13972] [10] > /usr/local/lib/libmpi.so.1(PMPI_File_close+0x78)[0x7f5845878118] > [oriol-VirtualBox:13972] [11] ./binary[0x42099e] > [oriol-VirtualBox:13972] [12] ./binary[0x48ed86] > [oriol-VirtualBox:13972] [13] ./binary[0x40e49f] > [oriol-VirtualBox:13972] [14] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f5844a2ede5] > [oriol-VirtualBox:13972] [15] ./binary[0x40d679] > [oriol-VirtualBox:13972] *** End of error message *** > -------------------------------------------------------------------------- > mpirun noticed that process rank 2 with PID 13969 on node oriol-VirtualBox > exited on signal 6 (Aborted). > -------------------------------------------------------------------------- > > -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
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