Ralph,
Sorry it took me a bit of time. Here you go:
(1002) $
/discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2-debug/bin/mpirun
--leave-session-attached --debug-daemons --mca oob_base_verbose 10 -mca
plm_base_verbose 5 -np 8 ./helloWorld.182-debug.x
[borg01w063:03815] mca:base:select:( plm) Querying component [isolated]
[borg01w063:03815] mca:base:select:( plm) Query of component [isolated]
set priority to 0
[borg01w063:03815] mca:base:select:( plm) Querying component [rsh]
[borg01w063:03815] [[INVALID],INVALID] plm:rsh_lookup on agent ssh : rsh
path NULL
[borg01w063:03815] mca:base:select:( plm) Query of component [rsh] set
priority to 10
[borg01w063:03815] mca:base:select:( plm) Querying component [slurm]
[borg01w063:03815] [[INVALID],INVALID] plm:slurm: available for selection
[borg01w063:03815] mca:base:select:( plm) Query of component [slurm] set
priority to 75
[borg01w063:03815] mca:base:select:( plm) Selected component [slurm]
[borg01w063:03815] plm:base:set_hnp_name: initial bias 3815 nodename hash
1757783593
[borg01w063:03815] plm:base:set_hnp_name: final jobfam 49163
[borg01w063:03815] mca: base: components_register: registering oob
components
[borg01w063:03815] mca: base: components_register: found loaded component
tcp
[borg01w063:03815] mca: base: components_register: component tcp register
function successful
[borg01w063:03815] mca: base: components_open: opening oob components
[borg01w063:03815] mca: base: components_open: found loaded component tcp
[borg01w063:03815] mca: base: components_open: component tcp open function
successful
[borg01w063:03815] mca:oob:select: checking available component tcp
[borg01w063:03815] mca:oob:select: Querying component [tcp]
[borg01w063:03815] oob:tcp: component_available called
[borg01w063:03815] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w063:03815] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w063:03815] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w063:03815] [[49163,0],0] oob:tcp:init adding 10.1.24.63 to our list
of V4 connections
[borg01w063:03815] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w063:03815] [[49163,0],0] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w063:03815] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w063:03815] [[49163,0],0] oob:tcp:init adding 10.12.24.63 to our
list of V4 connections
[borg01w063:03815] [[49163,0],0] TCP STARTUP
[borg01w063:03815] [[49163,0],0] attempting to bind to IPv4 port 0
[borg01w063:03815] [[49163,0],0] assigned IPv4 port 41373
[borg01w063:03815] mca:oob:select: Adding component to end
[borg01w063:03815] mca:oob:select: Found 1 active transports
[borg01w063:03815] [[49163,0],0] plm:base:receive start comm
[borg01w063:03815] [[49163,0],0] plm:base:setup_job
[borg01w063:03815] [[49163,0],0] plm:slurm: LAUNCH DAEMONS CALLED
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm creating map
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm add new daemon
[[49163,0],1]
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm assigning new daemon
[[49163,0],1] to node borg01w064
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm add new daemon
[[49163,0],2]
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm assigning new daemon
[[49163,0],2] to node borg01w065
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm add new daemon
[[49163,0],3]
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm assigning new daemon
[[49163,0],3] to node borg01w069
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm add new daemon
[[49163,0],4]
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm assigning new daemon
[[49163,0],4] to node borg01w070
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm add new daemon
[[49163,0],5]
[borg01w063:03815] [[49163,0],0] plm:base:setup_vm assigning new daemon
[[49163,0],5] to node borg01w071
[borg01w063:03815] [[49163,0],0] plm:slurm: launching on nodes
borg01w064,borg01w065,borg01w069,borg01w070,borg01w071
[borg01w063:03815] [[49163,0],0] plm:slurm: Set
prefix:/discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2-debug
[borg01w063:03815] [[49163,0],0] plm:slurm: final top-level argv:
srun --ntasks-per-node=1 --kill-on-bad-exit --cpu_bind=none --nodes=5
--nodelist=borg01w064,borg01w065,borg01w069,borg01w070,borg01w071
--ntasks=5 orted -mca orte_debug_daemons 1 -mca orte_leave_session_attached
1 -mca orte_ess_jobid 3221946368 -mca orte_ess_vpid 1 -mca
orte_ess_num_procs 6 -mca orte_hnp_uri 3221946368.0;tcp://10.1.24.63
,172.31.1.254,10.12.24.63:41373 --mca oob_base_verbose 10 -mca
plm_base_verbose 5
[borg01w063:03815] [[49163,0],0] plm:slurm: reset PATH:
/discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2-debug/bin:/usr/local/other/SLES11/gcc/4.9.1/bin:/usr/local/other/SLES11.1/git/
1.8.5.2/libexec/git-core:/usr/local/other/SLES11.1/git/1.8.5.2/bin:/usr/local/other/SLES11/svn/1.6.17/bin:/usr/local/other/SLES11/tkcvs/8.2.3/gcc-4.3.2/bin:.:/home/mathomp4/bin:/home/mathomp4/cvstools:/discover/nobackup/projects/gmao/share/dasilva/opengrads/Contents:/usr/local/other/Htop/1.0/bin:/usr/local/other/SLES11/gnuplot/4.6.0/gcc-4.3.2/bin:/usr/local/other/SLES11/xpdf/3.03-gcc-4.3.2/bin:/home/mathomp4/src/pdtoolkit-3.16/x86_64/bin:/discover/nobackup/mathomp4/WavewatchIII-GMAO/bin:/discover/nobackup/mathomp4/WavewatchIII-GMAO/exe:/usr/local/other/pods:/usr/local/other/SLES11.1/R/3.1.0/gcc-4.3.4/lib64/R/bin:.:/home/mathomp4/bin:/home/mathomp4/cvstools:/discover/nobackup/projects/gmao/share/dasilva/opengrads/Contents:/usr/local/other/Htop/1.0/bin:/usr/local/other/SLES11/gnuplot/4.6.0/gcc-4.3.2/bin:/usr/local/other/SLES11/xpdf/3.03-gcc-4.3.2/bin:/home/mathomp4/src/pdtoolkit-3.16/x86_64/bin:/discover/nobackup/mathomp4/WavewatchIII-GMAO/bin:/discover/nobackup/mathomp4/WavewatchIII-GMAO/exe:/usr/local/other/pods:/usr/local/other/SLES11.1/R/3.1.0/gcc-4.3.4/lib64/R/bin:/home/mathomp4/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/kde3/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/slurm/bin
[borg01w063:03815] [[49163,0],0] plm:slurm: reset LD_LIBRARY_PATH:
/discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2-debug/lib:/usr/local/other/SLES11/gcc/4.9.1/lib64:/usr/local/other/SLES11.1/git/
1.8.5.2/lib:/usr/local/other/SLES11/svn/1.6.17/lib:/usr/local/other/SLES11/tkcvs/8.2.3/gcc-4.3.2/lib
srun.slurm: cluster configuration lacks support for cpu binding
srun.slurm: cluster configuration lacks support for cpu binding
[borg01w065:15893] mca: base: components_register: registering oob
components
[borg01w065:15893] mca: base: components_register: found loaded component
tcp
[borg01w065:15893] mca: base: components_register: component tcp register
function successful
[borg01w065:15893] mca: base: components_open: opening oob components
[borg01w065:15893] mca: base: components_open: found loaded component tcp
[borg01w065:15893] mca: base: components_open: component tcp open function
successful
[borg01w065:15893] mca:oob:select: checking available component tcp
[borg01w065:15893] mca:oob:select: Querying component [tcp]
[borg01w065:15893] oob:tcp: component_available called
[borg01w065:15893] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w065:15893] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w065:15893] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w065:15893] [[49163,0],2] oob:tcp:init adding 10.1.24.65 to our list
of V4 connections
[borg01w065:15893] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w065:15893] [[49163,0],2] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w065:15893] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w065:15893] [[49163,0],2] oob:tcp:init adding 10.12.24.65 to our
list of V4 connections
[borg01w065:15893] [[49163,0],2] TCP STARTUP
[borg01w065:15893] [[49163,0],2] attempting to bind to IPv4 port 0
[borg01w065:15893] [[49163,0],2] assigned IPv4 port 43456
[borg01w065:15893] mca:oob:select: Adding component to end
[borg01w065:15893] mca:oob:select: Found 1 active transports
[borg01w070:12645] mca: base: components_register: registering oob
components
[borg01w070:12645] mca: base: components_register: found loaded component
tcp
[borg01w070:12645] mca: base: components_register: component tcp register
function successful
[borg01w070:12645] mca: base: components_open: opening oob components
[borg01w070:12645] mca: base: components_open: found loaded component tcp
[borg01w070:12645] mca: base: components_open: component tcp open function
successful
[borg01w070:12645] mca:oob:select: checking available component tcp
[borg01w070:12645] mca:oob:select: Querying component [tcp]
[borg01w070:12645] oob:tcp: component_available called
[borg01w070:12645] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w070:12645] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w070:12645] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w070:12645] [[49163,0],4] oob:tcp:init adding 10.1.24.70 to our list
of V4 connections
[borg01w070:12645] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w070:12645] [[49163,0],4] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w070:12645] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w070:12645] [[49163,0],4] oob:tcp:init adding 10.12.24.70 to our
list of V4 connections
[borg01w070:12645] [[49163,0],4] TCP STARTUP
[borg01w070:12645] [[49163,0],4] attempting to bind to IPv4 port 0
[borg01w070:12645] [[49163,0],4] assigned IPv4 port 53062
[borg01w070:12645] mca:oob:select: Adding component to end
[borg01w070:12645] mca:oob:select: Found 1 active transports
[borg01w064:16565] mca: base: components_register: registering oob
components
[borg01w064:16565] mca: base: components_register: found loaded component
tcp
[borg01w064:16565] mca: base: components_register: component tcp register
function successful
[borg01w071:14879] mca: base: components_register: registering oob
components
[borg01w071:14879] mca: base: components_register: found loaded component
tcp
[borg01w064:16565] mca: base: components_open: opening oob components
[borg01w064:16565] mca: base: components_open: found loaded component tcp
[borg01w064:16565] mca: base: components_open: component tcp open function
successful
[borg01w064:16565] mca:oob:select: checking available component tcp
[borg01w064:16565] mca:oob:select: Querying component [tcp]
[borg01w064:16565] oob:tcp: component_available called
[borg01w064:16565] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w064:16565] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w064:16565] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w064:16565] [[49163,0],1] oob:tcp:init adding 10.1.24.64 to our list
of V4 connections
[borg01w064:16565] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w064:16565] [[49163,0],1] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w064:16565] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w064:16565] [[49163,0],1] oob:tcp:init adding 10.12.24.64 to our
list of V4 connections
[borg01w064:16565] [[49163,0],1] TCP STARTUP
[borg01w064:16565] [[49163,0],1] attempting to bind to IPv4 port 0
[borg01w064:16565] [[49163,0],1] assigned IPv4 port 43828
[borg01w064:16565] mca:oob:select: Adding component to end
[borg01w069:30276] mca: base: components_register: registering oob
components
[borg01w069:30276] mca: base: components_register: found loaded component
tcp
[borg01w071:14879] mca: base: components_register: component tcp register
function successful
[borg01w069:30276] mca: base: components_register: component tcp register
function successful
[borg01w071:14879] mca: base: components_open: opening oob components
[borg01w071:14879] mca: base: components_open: found loaded component tcp
[borg01w071:14879] mca: base: components_open: component tcp open function
successful
[borg01w071:14879] mca:oob:select: checking available component tcp
[borg01w071:14879] mca:oob:select: Querying component [tcp]
[borg01w071:14879] oob:tcp: component_available called
[borg01w069:30276] mca: base: components_open: opening oob components
[borg01w069:30276] mca: base: components_open: found loaded component tcp
[borg01w069:30276] mca: base: components_open: component tcp open function
successful
[borg01w071:14879] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w071:14879] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w071:14879] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w071:14879] [[49163,0],5] oob:tcp:init adding 10.1.24.71 to our list
of V4 connections
[borg01w071:14879] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w069:30276] mca:oob:select: checking available component tcp
[borg01w069:30276] mca:oob:select: Querying component [tcp]
[borg01w069:30276] oob:tcp: component_available called
[borg01w071:14879] [[49163,0],5] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w071:14879] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w071:14879] [[49163,0],5] oob:tcp:init adding 10.12.24.71 to our
list of V4 connections
[borg01w071:14879] [[49163,0],5] TCP STARTUP
[borg01w069:30276] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
[borg01w069:30276] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
[borg01w069:30276] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
[borg01w069:30276] [[49163,0],3] oob:tcp:init adding 10.1.24.69 to our list
of V4 connections
[borg01w069:30276] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
[borg01w069:30276] [[49163,0],3] oob:tcp:init adding 172.31.1.254 to our
list of V4 connections
[borg01w069:30276] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
[borg01w069:30276] [[49163,0],3] oob:tcp:init adding 10.12.24.69 to our
list of V4 connections
[borg01w069:30276] [[49163,0],3] TCP STARTUP
[borg01w071:14879] [[49163,0],5] attempting to bind to IPv4 port 0
[borg01w069:30276] [[49163,0],3] attempting to bind to IPv4 port 0
[borg01w069:30276] [[49163,0],3] assigned IPv4 port 39299
[borg01w064:16565] mca:oob:select: Found 1 active transports
[borg01w069:30276] mca:oob:select: Adding component to end
[borg01w069:30276] mca:oob:select: Found 1 active transports
[borg01w071:14879] [[49163,0],5] assigned IPv4 port 56113
[borg01w071:14879] mca:oob:select: Adding component to end
[borg01w071:14879] mca:oob:select: Found 1 active transports
srun.slurm: error: borg01w064: task 0: Exited with exit code 213
srun.slurm: Terminating job step 2347743.3
srun.slurm: Job step aborted: Waiting up to 2 seconds for job step to
finish.
[borg01w070:12645] [[49163,0],4] ORTE_ERROR_LOG: Bad parameter in file
base/rml_base_contact.c at line 161
[borg01w070:12645] [[49163,0],4] ORTE_ERROR_LOG: Bad parameter in file
routed_binomial.c at line 498
[borg01w070:12645] [[49163,0],4] ORTE_ERROR_LOG: Bad parameter in file
base/ess_base_std_orted.c at line 539
[borg01w065:15893] [[49163,0],2] ORTE_ERROR_LOG: Bad parameter in file
base/rml_base_contact.c at line 161
[borg01w065:15893] [[49163,0],2] ORTE_ERROR_LOG: Bad parameter in file
routed_binomial.c at line 498
[borg01w065:15893] [[49163,0],2] ORTE_ERROR_LOG: Bad parameter in file
base/ess_base_std_orted.c at line 539
slurmd[borg01w065]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
slurmd[borg01w070]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
[borg01w064:16565] [[49163,0],1] ORTE_ERROR_LOG: Bad parameter in file
base/rml_base_contact.c at line 161
[borg01w064:16565] [[49163,0],1] ORTE_ERROR_LOG: Bad parameter in file
routed_binomial.c at line 498
[borg01w064:16565] [[49163,0],1] ORTE_ERROR_LOG: Bad parameter in file
base/ess_base_std_orted.c at line 539
[borg01w069:30276] [[49163,0],3] ORTE_ERROR_LOG: Bad parameter in file
base/rml_base_contact.c at line 161
[borg01w069:30276] [[49163,0],3] ORTE_ERROR_LOG: Bad parameter in file
routed_binomial.c at line 498
[borg01w069:30276] [[49163,0],3] ORTE_ERROR_LOG: Bad parameter in file
base/ess_base_std_orted.c at line 539
slurmd[borg01w069]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
[borg01w071:14879] [[49163,0],5] ORTE_ERROR_LOG: Bad parameter in file
base/rml_base_contact.c at line 161
[borg01w071:14879] [[49163,0],5] ORTE_ERROR_LOG: Bad parameter in file
routed_binomial.c at line 498
[borg01w071:14879] [[49163,0],5] ORTE_ERROR_LOG: Bad parameter in file
base/ess_base_std_orted.c at line 539
slurmd[borg01w071]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
slurmd[borg01w065]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
slurmd[borg01w069]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
slurmd[borg01w070]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
slurmd[borg01w071]: *** STEP 2347743.3 KILLED AT 2014-08-31T09:24:17 WITH
SIGNAL 9 ***
srun.slurm: error: borg01w069: task 2: Exited with exit code 213
srun.slurm: error: borg01w065: task 1: Exited with exit code 213
srun.slurm: error: borg01w071: task 4: Exited with exit code 213
srun.slurm: error: borg01w070: task 3: Exited with exit code 213
sh: tcp://10.1.24.63,172.31.1.254,10.12.24.63:41373: No such file or
directory
[borg01w063:03815] [[49163,0],0] plm:slurm: primary daemons complete!
[borg01w063:03815] [[49163,0],0] plm:base:receive stop comm
[borg01w063:03815] [[49163,0],0] TCP SHUTDOWN
[borg01w063:03815] mca: base: close: component tcp closed
[borg01w063:03815] mca: base: close: unloading component tcp
On Fri, Aug 29, 2014 at 3:18 PM, Ralph Castain <r...@open-mpi.org> wrote:
> Rats - I also need "-mca plm_base_verbose 5" on there so I can see the cmd
> line being executed. Can you add it?
>
>
> On Aug 29, 2014, at 11:16 AM, Matt Thompson <fort...@gmail.com> wrote:
>
> Ralph,
>
> Here you go:
>
> (1080) $
> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2-debug/bin/mpirun
> --leave-session-attached --debug-daemons --mca oob_base_verbose 10 -np 8
> ./helloWorld.182-debug.x
> [borg01x142:29232] mca: base: components_register: registering oob
> components
> [borg01x142:29232] mca: base: components_register: found loaded component
> tcp
> [borg01x142:29232] mca: base: components_register: component tcp register
> function successful
> [borg01x142:29232] mca: base: components_open: opening oob components
> [borg01x142:29232] mca: base: components_open: found loaded component tcp
> [borg01x142:29232] mca: base: components_open: component tcp open function
> successful
> [borg01x142:29232] mca:oob:select: checking available component tcp
> [borg01x142:29232] mca:oob:select: Querying component [tcp]
> [borg01x142:29232] oob:tcp: component_available called
> [borg01x142:29232] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x142:29232] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x142:29232] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x142:29232] [[52298,0],0] oob:tcp:init adding 10.1.25.142 to our
> list of V4 connections
> [borg01x142:29232] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x142:29232] [[52298,0],0] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x142:29232] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x142:29232] [[52298,0],0] oob:tcp:init adding 10.12.25.142 to our
> list of V4 connections
> [borg01x142:29232] [[52298,0],0] TCP STARTUP
> [borg01x142:29232] [[52298,0],0] attempting to bind to IPv4 port 0
> [borg01x142:29232] [[52298,0],0] assigned IPv4 port 41686
> [borg01x142:29232] mca:oob:select: Adding component to end
> [borg01x142:29232] mca:oob:select: Found 1 active transports
> srun.slurm: cluster configuration lacks support for cpu binding
> srun.slurm: cluster configuration lacks support for cpu binding
> [borg01x153:01290] mca: base: components_register: registering oob
> components
> [borg01x153:01290] mca: base: components_register: found loaded component
> tcp
> [borg01x143:13793] mca: base: components_register: registering oob
> components
> [borg01x143:13793] mca: base: components_register: found loaded component
> tcp
> [borg01x153:01290] mca: base: components_register: component tcp register
> function successful
> [borg01x153:01290] mca: base: components_open: opening oob components
> [borg01x153:01290] mca: base: components_open: found loaded component tcp
> [borg01x153:01290] mca: base: components_open: component tcp open function
> successful
> [borg01x153:01290] mca:oob:select: checking available component tcp
> [borg01x153:01290] mca:oob:select: Querying component [tcp]
> [borg01x153:01290] oob:tcp: component_available called
> [borg01x153:01290] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x153:01290] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x153:01290] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x153:01290] [[52298,0],4] oob:tcp:init adding 10.1.25.153 to our
> list of V4 connections
> [borg01x153:01290] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x153:01290] [[52298,0],4] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x153:01290] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x153:01290] [[52298,0],4] oob:tcp:init adding 10.12.25.153 to our
> list of V4 connections
> [borg01x153:01290] [[52298,0],4] TCP STARTUP
> [borg01x153:01290] [[52298,0],4] attempting to bind to IPv4 port 0
> [borg01x143:13793] mca: base: components_register: component tcp register
> function successful
> [borg01x153:01290] [[52298,0],4] assigned IPv4 port 38028
> [borg01x143:13793] mca: base: components_open: opening oob components
> [borg01x143:13793] mca: base: components_open: found loaded component tcp
> [borg01x143:13793] mca: base: components_open: component tcp open function
> successful
> [borg01x143:13793] mca:oob:select: checking available component tcp
> [borg01x143:13793] mca:oob:select: Querying component [tcp]
> [borg01x143:13793] oob:tcp: component_available called
> [borg01x143:13793] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x143:13793] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x143:13793] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x143:13793] [[52298,0],1] oob:tcp:init adding 10.1.25.143 to our
> list of V4 connections
> [borg01x143:13793] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x143:13793] [[52298,0],1] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x143:13793] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x143:13793] [[52298,0],1] oob:tcp:init adding 10.12.25.143 to our
> list of V4 connections
> [borg01x143:13793] [[52298,0],1] TCP STARTUP
> [borg01x143:13793] [[52298,0],1] attempting to bind to IPv4 port 0
> [borg01x153:01290] mca:oob:select: Adding component to end
> [borg01x153:01290] mca:oob:select: Found 1 active transports
> [borg01x143:13793] [[52298,0],1] assigned IPv4 port 44719
> [borg01x143:13793] mca:oob:select: Adding component to end
> [borg01x143:13793] mca:oob:select: Found 1 active transports
> [borg01x144:30878] mca: base: components_register: registering oob
> components
> [borg01x144:30878] mca: base: components_register: found loaded component
> tcp
> [borg01x144:30878] mca: base: components_register: component tcp register
> function successful
> [borg01x144:30878] mca: base: components_open: opening oob components
> [borg01x144:30878] mca: base: components_open: found loaded component tcp
> [borg01x144:30878] mca: base: components_open: component tcp open function
> successful
> [borg01x144:30878] mca:oob:select: checking available component tcp
> [borg01x144:30878] mca:oob:select: Querying component [tcp]
> [borg01x144:30878] oob:tcp: component_available called
> [borg01x144:30878] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x144:30878] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x144:30878] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x144:30878] [[52298,0],2] oob:tcp:init adding 10.1.25.144 to our
> list of V4 connections
> [borg01x144:30878] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x144:30878] [[52298,0],2] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x144:30878] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x144:30878] [[52298,0],2] oob:tcp:init adding 10.12.25.144 to our
> list of V4 connections
> [borg01x144:30878] [[52298,0],2] TCP STARTUP
> [borg01x144:30878] [[52298,0],2] attempting to bind to IPv4 port 0
> [borg01x144:30878] [[52298,0],2] assigned IPv4 port 40700
> [borg01x144:30878] mca:oob:select: Adding component to end
> [borg01x144:30878] mca:oob:select: Found 1 active transports
> [borg01x154:01154] mca: base: components_register: registering oob
> components
> [borg01x154:01154] mca: base: components_register: found loaded component
> tcp
> [borg01x154:01154] mca: base: components_register: component tcp register
> function successful
> [borg01x154:01154] mca: base: components_open: opening oob components
> [borg01x154:01154] mca: base: components_open: found loaded component tcp
> [borg01x154:01154] mca: base: components_open: component tcp open function
> successful
> [borg01x154:01154] mca:oob:select: checking available component tcp
> [borg01x154:01154] mca:oob:select: Querying component [tcp]
> [borg01x154:01154] oob:tcp: component_available called
> [borg01x154:01154] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x154:01154] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x154:01154] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x154:01154] [[52298,0],5] oob:tcp:init adding 10.1.25.154 to our
> list of V4 connections
> [borg01x154:01154] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x154:01154] [[52298,0],5] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x154:01154] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x154:01154] [[52298,0],5] oob:tcp:init adding 10.12.25.154 to our
> list of V4 connections
> [borg01x154:01154] [[52298,0],5] TCP STARTUP
> [borg01x154:01154] [[52298,0],5] attempting to bind to IPv4 port 0
> [borg01x154:01154] [[52298,0],5] assigned IPv4 port 41191
> [borg01x154:01154] mca:oob:select: Adding component to end
> [borg01x154:01154] mca:oob:select: Found 1 active transports
> [borg01x145:02419] mca: base: components_register: registering oob
> components
> [borg01x145:02419] mca: base: components_register: found loaded component
> tcp
> [borg01x145:02419] mca: base: components_register: component tcp register
> function successful
> [borg01x145:02419] mca: base: components_open: opening oob components
> [borg01x145:02419] mca: base: components_open: found loaded component tcp
> [borg01x145:02419] mca: base: components_open: component tcp open function
> successful
> [borg01x145:02419] mca:oob:select: checking available component tcp
> [borg01x145:02419] mca:oob:select: Querying component [tcp]
> [borg01x145:02419] oob:tcp: component_available called
> [borg01x145:02419] WORKING INTERFACE 1 KERNEL INDEX 1 FAMILY: V4
> [borg01x145:02419] WORKING INTERFACE 2 KERNEL INDEX 1 FAMILY: V4
> [borg01x145:02419] WORKING INTERFACE 3 KERNEL INDEX 2 FAMILY: V4
> [borg01x145:02419] [[52298,0],3] oob:tcp:init adding 10.1.25.145 to our
> list of V4 connections
> [borg01x145:02419] WORKING INTERFACE 4 KERNEL INDEX 4 FAMILY: V4
> [borg01x145:02419] [[52298,0],3] oob:tcp:init adding 172.31.1.254 to our
> list of V4 connections
> [borg01x145:02419] WORKING INTERFACE 5 KERNEL INDEX 5 FAMILY: V4
> [borg01x145:02419] [[52298,0],3] oob:tcp:init adding 10.12.25.145 to our
> list of V4 connections
> [borg01x145:02419] [[52298,0],3] TCP STARTUP
> [borg01x145:02419] [[52298,0],3] attempting to bind to IPv4 port 0
> [borg01x145:02419] [[52298,0],3] assigned IPv4 port 51079
> [borg01x145:02419] mca:oob:select: Adding component to end
> [borg01x145:02419] mca:oob:select: Found 1 active transports
> [borg01x144:30878] [[52298,0],2] ORTE_ERROR_LOG: Bad parameter in file
> base/rml_base_contact.c at line 161
> [borg01x144:30878] [[52298,0],2] ORTE_ERROR_LOG: Bad parameter in file
> routed_binomial.c at line 498
> [borg01x144:30878] [[52298,0],2] ORTE_ERROR_LOG: Bad parameter in file
> base/ess_base_std_orted.c at line 539
> srun.slurm: error: borg01x143: task 0: Exited with exit code 213
> srun.slurm: Terminating job step 2332583.24
> slurmd[borg01x144]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> srun.slurm: Job step aborted: Waiting up to 2 seconds for job step to
> finish.
> srun.slurm: error: borg01x153: task 3: Exited with exit code 213
> [borg01x153:01290] [[52298,0],4] ORTE_ERROR_LOG: Bad parameter in file
> base/rml_base_contact.c at line 161
> [borg01x153:01290] [[52298,0],4] ORTE_ERROR_LOG: Bad parameter in file
> routed_binomial.c at line 498
> [borg01x153:01290] [[52298,0],4] ORTE_ERROR_LOG: Bad parameter in file
> base/ess_base_std_orted.c at line 539
> [borg01x143:13793] [[52298,0],1] ORTE_ERROR_LOG: Bad parameter in file
> base/rml_base_contact.c at line 161
> [borg01x143:13793] [[52298,0],1] ORTE_ERROR_LOG: Bad parameter in file
> routed_binomial.c at line 498
> [borg01x143:13793] [[52298,0],1] ORTE_ERROR_LOG: Bad parameter in file
> base/ess_base_std_orted.c at line 539
> slurmd[borg01x144]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> srun.slurm: error: borg01x144: task 1: Exited with exit code 213
> [borg01x154:01154] [[52298,0],5] ORTE_ERROR_LOG: Bad parameter in file
> base/rml_base_contact.c at line 161
> [borg01x154:01154] [[52298,0],5] ORTE_ERROR_LOG: Bad parameter in file
> routed_binomial.c at line 498
> [borg01x154:01154] [[52298,0],5] ORTE_ERROR_LOG: Bad parameter in file
> base/ess_base_std_orted.c at line 539
> slurmd[borg01x154]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> slurmd[borg01x154]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> srun.slurm: error: borg01x154: task 4: Exited with exit code 213
> srun.slurm: error: borg01x145: task 2: Exited with exit code 213
> [borg01x145:02419] [[52298,0],3] ORTE_ERROR_LOG: Bad parameter in file
> base/rml_base_contact.c at line 161
> [borg01x145:02419] [[52298,0],3] ORTE_ERROR_LOG: Bad parameter in file
> routed_binomial.c at line 498
> [borg01x145:02419] [[52298,0],3] ORTE_ERROR_LOG: Bad parameter in file
> base/ess_base_std_orted.c at line 539
> slurmd[borg01x145]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> slurmd[borg01x145]: *** STEP 2332583.24 KILLED AT 2014-08-29T13:59:30 WITH
> SIGNAL 9 ***
> sh: tcp://10.1.25.142,172.31.1.254,10.12.25.142:41686: No such file or
> directory
> [borg01x142:29232] [[52298,0],0] TCP SHUTDOWN
> [borg01x142:29232] mca: base: close: component tcp closed
> [borg01x142:29232] mca: base: close: unloading component tcp
>
> Note, if I can get the allocation today, I want to try doing all this on a
> single SandyBridge node, rather than on 6. It might make comparing various
> runs a bit easier!
>
> Matt
>
>
>
> On Fri, Aug 29, 2014 at 12:42 PM, Ralph Castain <r...@open-mpi.org> wrote:
>
>> Okay, something quite weird is happening here. I can't replicate using
>> the 1.8.2 release tarball on a slurm machine, so my guess is that something
>> else is going on here.
>>
>> Could you please rebuild the 1.8.2 code with --enable-debug on the
>> configure line (assuming you haven't already done so), and then rerun that
>> version as before but adding "--mca oob_base_verbose 10" to the cmd line?
>>
>>
>> On Aug 29, 2014, at 4:22 AM, Matt Thompson <fort...@gmail.com> wrote:
>>
>> Ralph,
>>
>> For 1.8.2rc4 I get:
>>
>> (1003) $
>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2rc4/bin/mpirun
>> --leave-session-attached --debug-daemons -np 8 ./helloWorld.182.x
>> srun.slurm: cluster configuration lacks support for cpu binding
>> srun.slurm: cluster configuration lacks support for cpu binding
>> Daemon [[47143,0],5] checking in as pid 10990 on host borg01x154
>> [borg01x154:10990] [[47143,0],5] orted: up and running - waiting for
>> commands!
>> Daemon [[47143,0],1] checking in as pid 23473 on host borg01x143
>> Daemon [[47143,0],2] checking in as pid 8250 on host borg01x144
>> [borg01x144:08250] [[47143,0],2] orted: up and running - waiting for
>> commands!
>> [borg01x143:23473] [[47143,0],1] orted: up and running - waiting for
>> commands!
>> Daemon [[47143,0],3] checking in as pid 12320 on host borg01x145
>> Daemon [[47143,0],4] checking in as pid 10902 on host borg01x153
>> [borg01x153:10902] [[47143,0],4] orted: up and running - waiting for
>> commands!
>> [borg01x145:12320] [[47143,0],3] orted: up and running - waiting for
>> commands!
>> [borg01x142:01629] [[47143,0],0] orted_cmd: received add_local_procs
>> [borg01x144:08250] [[47143,0],2] orted_cmd: received add_local_procs
>> [borg01x153:10902] [[47143,0],4] orted_cmd: received add_local_procs
>> [borg01x143:23473] [[47143,0],1] orted_cmd: received add_local_procs
>> [borg01x145:12320] [[47143,0],3] orted_cmd: received add_local_procs
>> [borg01x154:10990] [[47143,0],5] orted_cmd: received add_local_procs
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],0]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],2]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],3]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],1]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],5]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],4]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],6]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync+nidmap from
>> local proc [[47143,1],7]
>> MPIR_being_debugged = 0
>> MPIR_debug_state = 1
>> MPIR_partial_attach_ok = 1
>> MPIR_i_am_starter = 0
>> MPIR_forward_output = 0
>> MPIR_proctable_size = 8
>> MPIR_proctable:
>> (i, host, exe, pid) = (0, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1647)
>> (i, host, exe, pid) = (1, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1648)
>> (i, host, exe, pid) = (2, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1650)
>> (i, host, exe, pid) = (3, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1652)
>> (i, host, exe, pid) = (4, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1654)
>> (i, host, exe, pid) = (5, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1656)
>> (i, host, exe, pid) = (6, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1658)
>> (i, host, exe, pid) = (7, borg01x142,
>> /home/mathomp4/HelloWorldTest/./helloWorld.182.x, 1660)
>> MPIR_executable_path: NULL
>> MPIR_server_arguments: NULL
>> [borg01x142:01629] [[47143,0],0] orted_cmd: received message_local_procs
>> [borg01x144:08250] [[47143,0],2] orted_cmd: received message_local_procs
>> [borg01x143:23473] [[47143,0],1] orted_cmd: received message_local_procs
>> [borg01x153:10902] [[47143,0],4] orted_cmd: received message_local_procs
>> [borg01x154:10990] [[47143,0],5] orted_cmd: received message_local_procs
>> [borg01x145:12320] [[47143,0],3] orted_cmd: received message_local_procs
>> [borg01x142:01629] [[47143,0],0] orted_cmd: received message_local_procs
>> [borg01x143:23473] [[47143,0],1] orted_cmd: received message_local_procs
>> [borg01x144:08250] [[47143,0],2] orted_cmd: received message_local_procs
>> [borg01x153:10902] [[47143,0],4] orted_cmd: received message_local_procs
>> [borg01x145:12320] [[47143,0],3] orted_cmd: received message_local_procs
>> Process 2 of 8 is on borg01x142
>> Process 5 of 8 is on borg01x142
>> Process 4 of 8 is on borg01x142
>> Process 1 of 8 is on borg01x142
>> Process 0 of 8 is on borg01x142
>> Process 3 of 8 is on borg01x142
>> Process 6 of 8 is on borg01x142
>> Process 7 of 8 is on borg01x142
>> [borg01x154:10990] [[47143,0],5] orted_cmd: received message_local_procs
>> [borg01x142:01629] [[47143,0],0] orted_cmd: received message_local_procs
>> [borg01x144:08250] [[47143,0],2] orted_cmd: received message_local_procs
>> [borg01x143:23473] [[47143,0],1] orted_cmd: received message_local_procs
>> [borg01x153:10902] [[47143,0],4] orted_cmd: received message_local_procs
>> [borg01x154:10990] [[47143,0],5] orted_cmd: received message_local_procs
>> [borg01x145:12320] [[47143,0],3] orted_cmd: received message_local_procs
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],2]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],1]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],3]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],0]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],4]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],6]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],5]
>> [borg01x142:01629] [[47143,0],0] orted_recv: received sync from local
>> proc [[47143,1],7]
>> [borg01x142:01629] [[47143,0],0] orted_cmd: received exit cmd
>> [borg01x144:08250] [[47143,0],2] orted_cmd: received exit cmd
>> [borg01x144:08250] [[47143,0],2] orted_cmd: all routes and children gone
>> - exiting
>> [borg01x153:10902] [[47143,0],4] orted_cmd: received exit cmd
>> [borg01x153:10902] [[47143,0],4] orted_cmd: all routes and children gone
>> - exiting
>> [borg01x143:23473] [[47143,0],1] orted_cmd: received exit cmd
>> [borg01x154:10990] [[47143,0],5] orted_cmd: received exit cmd
>> [borg01x154:10990] [[47143,0],5] orted_cmd: all routes and children gone
>> - exiting
>> [borg01x145:12320] [[47143,0],3] orted_cmd: received exit cmd
>> [borg01x145:12320] [[47143,0],3] orted_cmd: all routes and children gone
>> - exiting
>>
>> Using the 1.8.2 mpirun:
>>
>> (1004) $
>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2/bin/mpirun
>> --leave-session-attached --debug-daemons -np 8 ./helloWorld.182.x
>> srun.slurm: cluster configuration lacks support for cpu binding
>> srun.slurm: cluster configuration lacks support for cpu binding
>> [borg01x143:23494] [[47330,0],1] ORTE_ERROR_LOG: Bad parameter in file
>> base/rml_base_contact.c at line 161
>> [borg01x143:23494] [[47330,0],1] ORTE_ERROR_LOG: Bad parameter in file
>> routed_binomial.c at line 498
>> [borg01x143:23494] [[47330,0],1] ORTE_ERROR_LOG: Bad parameter in file
>> base/ess_base_std_orted.c at line 539
>> srun.slurm: error: borg01x143: task 0: Exited with exit code 213
>> srun.slurm: Terminating job step 2332583.4
>> [borg01x153:10915] [[47330,0],4] ORTE_ERROR_LOG: Bad parameter in file
>> base/rml_base_contact.c at line 161
>> [borg01x153:10915] [[47330,0],4] ORTE_ERROR_LOG: Bad parameter in file
>> routed_binomial.c at line 498
>> [borg01x153:10915] [[47330,0],4] ORTE_ERROR_LOG: Bad parameter in file
>> base/ess_base_std_orted.c at line 539
>> [borg01x144:08263] [[47330,0],2] ORTE_ERROR_LOG: Bad parameter in file
>> base/rml_base_contact.c at line 161
>> [borg01x144:08263] [[47330,0],2] ORTE_ERROR_LOG: Bad parameter in file
>> routed_binomial.c at line 498
>> [borg01x144:08263] [[47330,0],2] ORTE_ERROR_LOG: Bad parameter in file
>> base/ess_base_std_orted.c at line 539
>> srun.slurm: Job step aborted: Waiting up to 2 seconds for job step to
>> finish.
>> slurmd[borg01x145]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> slurmd[borg01x154]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> slurmd[borg01x153]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> slurmd[borg01x153]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> srun.slurm: error: borg01x144: task 1: Exited with exit code 213
>> slurmd[borg01x144]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> slurmd[borg01x144]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> srun.slurm: error: borg01x153: task 3: Exited with exit code 213
>> slurmd[borg01x154]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> slurmd[borg01x145]: *** STEP 2332583.4 KILLED AT 2014-08-29T07:16:20 WITH
>> SIGNAL 9 ***
>> srun.slurm: error: borg01x154: task 4: Killed
>> srun.slurm: error: borg01x145: task 2: Killed
>> sh: tcp://10.1.25.142,172.31.1.254,10.12.25.142:34169: No such file or
>> directory
>>
>>
>>
>>
>> On Thu, Aug 28, 2014 at 7:17 PM, Ralph Castain <r...@open-mpi.org> wrote:
>>
>>> I'm unaware of any changes to the Slurm integration between rc4 and
>>> final release. It sounds like this might be something else going on - try
>>> adding "--leave-session-attached --debug-daemons" to your 1.8.2 command
>>> line and let's see if any errors get reported.
>>>
>>>
>>> On Aug 28, 2014, at 12:20 PM, Matt Thompson <fort...@gmail.com> wrote:
>>>
>>> Open MPI List,
>>>
>>> I recently encountered an odd bug with Open MPI 1.8.1 and GCC 4.9.1 on
>>> our cluster (reported on this list), and decided to try it with 1.8.2.
>>> However, we seem to be having an issue with Open MPI 1.8.2 and SLURM. Even
>>> weirder, Open MPI 1.8.2rc4 doesn't show the bug. And the bug is: I get no
>>> stdout with Open MPI 1.8.2. That is, HelloWorld doesn't work.
>>>
>>> To wit, our sysadmin has two tarballs:
>>>
>>> (1441) $ sha1sum openmpi-1.8.2rc4.tar.bz2
>>> 7e7496913c949451f546f22a1a159df25f8bb683 openmpi-1.8.2rc4.tar.bz2
>>> (1442) $ sha1sum openmpi-1.8.2.tar.gz
>>> cf2b1e45575896f63367406c6c50574699d8b2e1 openmpi-1.8.2.tar.gz
>>>
>>> I then build each with a script in the method our sysadmin usually does:
>>>
>>> #!/bin/sh
>>>> set -x
>>>> export PREFIX=/discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2
>>>> export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/nlocal/slurm/2.6.3/lib64
>>>> build() {
>>>> echo `pwd`
>>>> ./configure --with-slurm --disable-wrapper-rpath --enable-shared
>>>> --enable-mca-no-build=btl-usnic \
>>>> CC=gcc CXX=g++ F77=gfortran FC=gfortran \
>>>> CFLAGS="-mtune=generic -fPIC -m64" CXXFLAGS="-mtune=generic -fPIC
>>>> -m64" FFLAGS="-mtune=generic -fPIC -m64" \
>>>> F77FLAGS="-mtune=generic -fPIC -m64" FCFLAGS="-mtune=generic
>>>> -fPIC -m64" F90FLAGS="-mtune=generic -fPIC -m64" \
>>>> LDFLAGS="-L/usr/nlocal/slurm/2.6.3/lib64"
>>>> CPPFLAGS="-I/usr/nlocal/slurm/2.6.3/include" LIBS="-lpciaccess" \
>>>> --prefix=${PREFIX} 2>&1 | tee configure.1.8.2.log
>>>> make 2>&1 | tee make.1.8.2.log
>>>> make check 2>&1 | tee makecheck.1.8.2.log
>>>> make install 2>&1 | tee makeinstall.1.8.2.log
>>>> }
>>>> echo "calling build"
>>>> build
>>>> echo "exiting"
>>>
>>>
>>> The only difference between the two is '1.8.2' or '1.8.2rc4' in the
>>> PREFIX and log file tees. Now, let us test. First, I grab some nodes with
>>> slurm:
>>>
>>> $ salloc --nodes=6 --ntasks-per-node=16 --constraint=sand
>>>> --time=09:00:00 --account=g0620 --mail-type=BEGIN
>>>
>>>
>>> Once I get my nodes, I run with 1.8.2rc4:
>>>
>>> (1142) $
>>>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2rc4/bin/mpifort -o
>>>> helloWorld.182rc4.x helloWorld.F90
>>>> (1143) $
>>>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2rc4/bin/mpirun -np 8
>>>> ./helloWorld.182rc4.x
>>>> Process 0 of 8 is on borg01w044
>>>> Process 5 of 8 is on borg01w044
>>>> Process 3 of 8 is on borg01w044
>>>> Process 7 of 8 is on borg01w044
>>>> Process 1 of 8 is on borg01w044
>>>> Process 2 of 8 is on borg01w044
>>>> Process 4 of 8 is on borg01w044
>>>> Process 6 of 8 is on borg01w044
>>>
>>>
>>> Now 1.8.2:
>>>
>>> (1144) $
>>>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2/bin/mpifort -o
>>>> helloWorld.182.x helloWorld.F90
>>>> (1145) $
>>>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2/bin/mpirun -np 8
>>>> ./helloWorld.182.x
>>>> (1146) $
>>>
>>>
>>> No output at all. But, if I take the helloWorld.x from 1.8.2 and run it
>>> with 1.8.2rc4's mpirun:
>>>
>>> (1146) $
>>>> /discover/nobackup/mathomp4/MPI/gcc_4.9.1-openmpi_1.8.2rc4/bin/mpirun -np 8
>>>> ./helloWorld.182.x
>>>> Process 5 of 8 is on borg01w044
>>>> Process 7 of 8 is on borg01w044
>>>> Process 2 of 8 is on borg01w044
>>>> Process 4 of 8 is on borg01w044
>>>> Process 1 of 8 is on borg01w044
>>>> Process 3 of 8 is on borg01w044
>>>> Process 6 of 8 is on borg01w044
>>>> Process 0 of 8 is on borg01w044
>>>
>>>
>>> So...any idea what is happening here? There did seem to be a few SLURM
>>> related changes between the two tarballs involving /dev/null but it's a bit
>>> above me to decipher.
>>>
>>> You can find the ompi_info, build, make, config, etc logs at these links
>>> (they are ~300kB which is over the mailing list limit according to the Open
>>> MPI web page):
>>>
>>> https://dl.dropboxusercontent.com/u/61696/OMPI-1.8.2rc4-Output.tar.bz2
>>> https://dl.dropboxusercontent.com/u/61696/OMPI-1.8.2-Output.tar.bz2
>>>
>>> Thank you for any help and please let me know if you need more
>>> information,
>>> Matt
>>>
>>> --
>>> "And, isn't sanity really just a one-trick pony anyway? I mean all you
>>> get is one trick: rational thinking. But when you're good and crazy,
>>> oooh, oooh, oooh, the sky is the limit!" -- The Tick
>>>
>>> _______________________________________________
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>>> Link to this post:
>>> http://www.open-mpi.org/community/lists/users/2014/08/25182.php
>>>
>>>
>>>
>>> _______________________________________________
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>>> Link to this post:
>>> http://www.open-mpi.org/community/lists/users/2014/08/25184.php
>>>
>>
>>
>>
>> --
>> "And, isn't sanity really just a one-trick pony anyway? I mean all you
>> get is one trick: rational thinking. But when you're good and crazy,
>> oooh, oooh, oooh, the sky is the limit!" -- The Tick
>>
>> _______________________________________________
>> users mailing list
>> us...@open-mpi.org
>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
>> Link to this post:
>> http://www.open-mpi.org/community/lists/users/2014/08/25187.php
>>
>>
>>
>> _______________________________________________
>> users mailing list
>> us...@open-mpi.org
>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
>> Link to this post:
>> http://www.open-mpi.org/community/lists/users/2014/08/25193.php
>>
>
>
>
> --
> "And, isn't sanity really just a one-trick pony anyway? I mean all you
> get is one trick: rational thinking. But when you're good and crazy,
> oooh, oooh, oooh, the sky is the limit!" -- The Tick
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2014/08/25196.php
>
>
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2014/08/25197.php
>
--
"And, isn't sanity really just a one-trick pony anyway? I mean all you
get is one trick: rational thinking. But when you're good and crazy,
oooh, oooh, oooh, the sky is the limit!" -- The Tick
