Hi, yesterday I installed openmpi-1.8.3a1r32641 on my machines (Solaris 10 Sparc (tyr), Solaris 10 x86_64 (sunpc0), and openSUSE Linux 12.1 x86_64 (linpc0)) with Sun C 5.12 and gcc-4.9.0. A small Java program breaks with SIGSEGV. gdb shows the following backtrace for the Sun C version.
tyr java 123 mpijavac InitFinalizeMain.java tyr java 124 /usr/local/gdb-7.6.1_64_gcc/bin/gdb /usr/local/openmpi-1.8.3_64_cc/bin/mpiexec GNU gdb (GDB) 7.6.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "sparc-sun-solaris2.10". For bug reporting instructions, please see: <http://www.gnu.org/software/gdb/bugs/>... Reading symbols from /export2/prog/SunOS_sparc/openmpi-1.8.3_64_cc/bin/orterun...done. (gdb) run -np 1 java InitFinalizeMain Starting program: /usr/local/openmpi-1.8.3_64_cc/bin/mpiexec -np 1 java InitFinalizeMain [Thread debugging using libthread_db enabled] [New Thread 1 (LWP 1)] [New LWP 2 ] # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=231, tid=2 # # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode solaris-sparc compressed oops) # Problematic frame: # C [libc.so.1+0x3c7f0] strlen+0x50 # # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again # # An error report file with more information is saved as: # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid231.log # # If you would like to submit a bug report, please visit: # http://bugreport.sun.com/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 231 on node tyr exited on signal 6 (Abort). -------------------------------------------------------------------------- [LWP 2 exited] [New Thread 2 ] [Switching to Thread 1 (LWP 1)] sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to satisfy query (gdb) bt #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 #8 0xffffffff7e8cb348 in vm_close () from /usr/local/openmpi-1.8.3_64_cc/lib64/libopen-pal.so.6 #9 0xffffffff7e8c8634 in lt_dlclose () from /usr/local/openmpi-1.8.3_64_cc/lib64/libopen-pal.so.6 #10 0xffffffff7e91eda4 in ri_destructor (obj=0x0) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_component_repository.c:386 #11 0xffffffff7e91c598 in opal_obj_run_destructors (object=0x0) at ../../../../openmpi-1.8.3a1r32641/opal/class/opal_object.h:446 #12 0xffffffff7e91e614 in mca_base_component_repository_release (component=0xf000) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_component_repository.c:244 #13 0xffffffff7e924c48 in mca_base_component_unload (component=0x0, output_id=1880997888) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:47 #14 0xffffffff7e924cec in mca_base_component_close (component=0xffffff7b100030ff, output_id=255) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:60 #15 0xffffffff7e924dfc in mca_base_components_close (output_id=767, components=0x0, skip=0xffffff7f73cdf800) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:86 #16 0xffffffff7e924d3c in mca_base_framework_components_close (framework=0xff, skip=0xffffff7c701ba800) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:68 #17 0xffffffff7ee1d690 in orte_oob_base_close () at ../../../../openmpi-1.8.3a1r32641/orte/mca/oob/base/oob_base_frame.c:94 #18 0xffffffff7e954b1c in mca_base_framework_close (framework=0xffffff7e8c84fcff) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_framework.c:187 #19 0xffffffff7be139fc in rte_finalize () at ../../../../../openmpi-1.8.3a1r32641/orte/mca/ess/hnp/ess_hnp_module.c:858 #20 0xffffffff7ec38154 in orte_finalize () at ../../openmpi-1.8.3a1r32641/orte/runtime/orte_finalize.c:65 #21 0x000000010000ddf0 in orterun (argc=3327, argv=0x0) at ../../../../openmpi-1.8.3a1r32641/orte/tools/orterun/orterun.c:1096 #22 0x0000000100004614 in main (argc=255, argv=0xffffff7f0788e800) at ../../../../openmpi-1.8.3a1r32641/orte/tools/orterun/main.c:13 (gdb) gdb shows the following backtrace for my gcc-version. tyr java 112 mpijavac InitFinalizeMain.java tyr java 113 /usr/local/gdb-7.6.1_64_gcc/bin/gdb /usr/local/openmpi-1.8.3_64_gcc/bin/mpiexec GNU gdb (GDB) 7.6.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "sparc-sun-solaris2.10". For bug reporting instructions, please see: <http://www.gnu.org/software/gdb/bugs/>... Reading symbols from /export2/prog/SunOS_sparc/openmpi-1.8.3_64_gcc/bin/orterun...done. (gdb) run -np 1 java InitFinalizeMain Starting program: /usr/local/openmpi-1.8.3_64_gcc/bin/mpiexec -np 1 java InitFinalizeMain [Thread debugging using libthread_db enabled] [New Thread 1 (LWP 1)] [New LWP 2 ] # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0xffffffff7ea3c7f0, pid=137, tid=2 # # JRE version: Java(TM) SE Runtime Environment (8.0-b132) (build 1.8.0-b132) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.0-b70 mixed mode solaris-sparc compressed oops) # Problematic frame: # C [libc.so.1+0x3c7f0] strlen+0x50 # # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again # # An error report file with more information is saved as: # /home/fd1026/work/skripte/master/parallel/prog/mpi/java/hs_err_pid137.log # # If you would like to submit a bug report, please visit: # http://bugreport.sun.com/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # -------------------------------------------------------------------------- mpiexec noticed that process rank 0 with PID 137 on node tyr exited on signal 6 (Abort). -------------------------------------------------------------------------- [LWP 2 exited] [New Thread 2 ] [Switching to Thread 1 (LWP 1)] sol_thread_fetch_registers: td_ta_map_id2thr: no thread can be found to satisfy query (gdb) bt #0 0xffffffff7f6173d0 in rtld_db_dlactivity () from /usr/lib/sparcv9/ld.so.1 #1 0xffffffff7f6175a8 in rd_event () from /usr/lib/sparcv9/ld.so.1 #2 0xffffffff7f618950 in lm_delete () from /usr/lib/sparcv9/ld.so.1 #3 0xffffffff7f6226bc in remove_so () from /usr/lib/sparcv9/ld.so.1 #4 0xffffffff7f624574 in remove_hdl () from /usr/lib/sparcv9/ld.so.1 #5 0xffffffff7f61d97c in dlclose_core () from /usr/lib/sparcv9/ld.so.1 #6 0xffffffff7f61d9d4 in dlclose_intn () from /usr/lib/sparcv9/ld.so.1 #7 0xffffffff7f61db0c in dlclose () from /usr/lib/sparcv9/ld.so.1 #8 0xffffffff7ec7748c in vm_close () from /usr/local/openmpi-1.8.3_64_gcc/lib64/libopen-pal.so.6 #9 0xffffffff7ec74a6c in lt_dlclose () from /usr/local/openmpi-1.8.3_64_gcc/lib64/libopen-pal.so.6 #10 0xffffffff7ec99b68 in ri_destructor (obj=0x1001eacd0) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_component_repository.c:386 #11 0xffffffff7ec984a4 in opal_obj_run_destructors (object=0x1001eacd0) at ../../../../openmpi-1.8.3a1r32641/opal/class/opal_object.h:446 #12 0xffffffff7ec99408 in mca_base_component_repository_release ( component=0xffffffff7b023ef0 <mca_oob_tcp_component>) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_component_repository.c:244 #13 0xffffffff7ec9b708 in mca_base_component_unload ( component=0xffffffff7b023ef0 <mca_oob_tcp_component>, output_id=-1) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:47 #14 0xffffffff7ec9b79c in mca_base_component_close ( component=0xffffffff7b023ef0 <mca_oob_tcp_component>, output_id=-1) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:60 #15 0xffffffff7ec9b870 in mca_base_components_close (output_id=-1, components=0xffffffff7f12b630 <orte_oob_base_framework+80>, skip=0x0) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:86 #16 0xffffffff7ec9b7d8 in mca_base_framework_components_close ( framework=0xffffffff7f12b5e0 <orte_oob_base_framework>, skip=0x0) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_components_close.c:66 #17 0xffffffff7efae0e8 in orte_oob_base_close () at ../../../../openmpi-1.8.3a1r32641/orte/mca/oob/base/oob_base_frame.c:94 #18 0xffffffff7ecb28f4 in mca_base_framework_close ( framework=0xffffffff7f12b5e0 <orte_oob_base_framework>) at ../../../../openmpi-1.8.3a1r32641/opal/mca/base/mca_base_framework.c:187 #19 0xffffffff7bf078c0 in rte_finalize () at ../../../../../openmpi-1.8.3a1r32641/orte/mca/ess/hnp/ess_hnp_module.c:858 #20 0xffffffff7ef30924 in orte_finalize () at ../../openmpi-1.8.3a1r32641/orte/runtime/orte_finalize.c:65 #21 0x00000001000070c4 in orterun (argc=5, argv=0xffffffff7fffe0f8) at ../../../../openmpi-1.8.3a1r32641/orte/tools/orterun/orterun.c:1096 #22 0x0000000100003d70 in main (argc=5, argv=0xffffffff7fffe0f8) at ../../../../openmpi-1.8.3a1r32641/orte/tools/orterun/main.c:13 (gdb) I would be grateful, if somebody can fix the problem. Thank you very much for any help in advance. Kind regards Siegmar
