Hi,
today I installed openmpi-dev-1567-g11e8c20 on my machines
(Solaris 10 Sparc, Solaris 10 x86_64, and openSUSE Linux 12.1
x86_64) with gcc-4.9.2. I used the following configure command
for all platforms.
../openmpi-dev-1567-g11e8c20/configure \
--prefix=/usr/local/openmpi-1.9.0_64_gcc \
--libdir=/usr/local/openmpi-1.9.0_64_gcc/lib64 \
--with-jdk-bindir=/usr/local/jdk1.8.0/bin \
--with-jdk-headers=/usr/local/jdk1.8.0/include \
JAVA_HOME=/usr/local/jdk1.8.0 \
LDFLAGS="-m64" CC="gcc" CXX="g++" FC="gfortran" \
CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
CPP="cpp" CXXCPP="cpp" \
CPPFLAGS="" CXXCPPFLAGS="" \
--enable-mpi-cxx \
--enable-cxx-exceptions \
--enable-mpi-java \
--enable-heterogeneous \
--enable-mpi-thread-multiple \
--with-hwloc=internal \
--without-verbs \
--with-wrapper-cflags="-std=c11 -m64" \
--with-wrapper-cxxflags="-m64" \
--with-wrapper-fcflags="-m64" \
--enable-debug \
|& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
I can run a small program on both Solaris machines without problems,
but get an error on Linux.
tyr java 123 mpiexec -np 6 --host sunpc1 java
MatMultWithAnyProc2DarrayIn1DarrayMain
You have started 6 processes but I need at most 4 processes.
I build a new worker group with 4 processes. The processes with
the following ranks in the basic group belong to the new group:
2 3 4 5
Group "groupOther" contains 2 processes which have
nothing to do.
Worker process 0 of 4 running on sunpc1.
Worker process 1 of 4 running on sunpc1.
Worker process 2 of 4 running on sunpc1.
Worker process 3 of 4 running on sunpc1.
(4,6)-matrix a:
1.00 2.00 3.00 4.00 5.00 6.00
7.00 8.00 9.00 10.00 11.00 12.00
13.00 14.00 15.00 16.00 17.00 18.00
19.00 20.00 21.00 22.00 23.00 24.00
...
I get the following error on my Linux machine.
tyr java 127 mpiexec -np 6 --host linpc1 java
MatMultWithAnyProc2DarrayIn1DarrayMain
Exception in thread "main" java.lang.NoClassDefFoundError: mpi/MPIException
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2688)
at java.lang.Class.getMethod0(Class.java:2937)
at java.lang.Class.getMethod(Class.java:1771)
at
sun.launcher.LauncherHelper.validateMainClass(LauncherHelper.java:544)
at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:526)
Caused by: java.lang.ClassNotFoundException: mpi.MPIException
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)Exception in
thread "main"
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 6 more
java.lang.NoClassDefFoundError: mpi/MPIException
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2688)
at java.lang.Class.getMethod0(Class.java:2937)
at java.lang.Class.getMethod(Class.java:1771)
at
sun.launcher.LauncherHelper.validateMainClass(LauncherHelper.java:544)
at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:526)
Caused by: java.lang.ClassNotFoundException: mpi.MPIException
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 6 more
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[57804,1],0]
Exit code: 1
--------------------------------------------------------------------------
tyr java 128
I would be grateful if somebody can fix the problem. Thank
you very much for any help in advance.
Kind regards
Siegmar
